Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00013 ATGGCCAGTAAGCTTGTTCAACCACCAATACCAGCTCTGCTCAGAACCACGAACAGACCCAGTGCCGATAGATTAAGTCCACAAACTCAGTGGACATCCAGAAGTGCAAGTTTTAGTGATTTCCCATCTGGGTTTTCTCCTATTTACACCCCTAGAGTTGCAGAGCAAACCCCTGGAGTTATAGGCGACGACACTCATGTCCAGATTAAGTCCGAGCTTTATCAAGCAGTAGAAGGAATCAACAGAGGGATTTTCGGAGTTTCATCTGCAAAAAGATCTGAGATTGAAGGTTTGGTGAGCCTGCTCGAGTCTCAAAATCCAACCCCAGATCCCACTTTGAATCTAGAAAAGGTGAGTGGATGCTGGAGGCTTATTTACAGTACAATCACCATTCTCGGCTCGAAAAGAACAAAGCTCGGACTGAGAGATTTCATCTCCTTGGGAGATTTTTTGCAGATCATCGACATTAACAAGGTATAA 480 44.58 MASKLVQPPIPALLRTTNRPSADRLSPQTQWTSRSASFSDFPSGFSPIYTPRVAEQTPGVIGDDTHVQIKSELYQAVEGINRGIFGVSSAKRSEIEGLVSLLESQNPTPDPTLNLEKVSGCWRLIYSTITILGSKRTKLGLRDFISLGDFLQIIDINKV 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 282942 284030 + Bpe006095.1 Bpe13g00013 112793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00013 159 Pfam PAP_fibrillin 68 158 IPR006843 -
Bpe13g00013 159 MobiDBLite consensus disorder prediction 1 36 - -
Bpe13g00013 159 PANTHER FIBRILLIN-5, CHLOROPLASTIC 1 158 - -
Bpe13g00013 159 PANTHER - 1 158 IPR039633 -
Bpe13g00013 159 MobiDBLite consensus disorder prediction 19 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00013 - - - qsu:112004602 204.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00013 Bpe-Chr13:282942 Bpe01g00028 Bpe-Chr1:239239 7.79E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1236 . Blo16g00518 . . . Bpe13g00013 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01354 . . . . Bma06g00527 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016198 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00013 Bpe_Chr13 FPKM 27.079103 28.607529 4.410687 4.779882 12.658611 11.158885 12.872097 1.057931 0.66677 0.750164