Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00054 ATGAACTTGATTGGCGATGCTGCAGTCGGCGAATCCGCCGTCGGGAGTGGCCGGACGGTGGTTGTCGGCGTCAAGTTGGAGTCGGAATGCCGGGAATTGCTCACTTGGACTCTTCTTAAAGTGGCTCAGCCTGGTGACCTTGTCATTGCACTTCACGTCCTCGATGCTTTCACTGACAAGGATGGCAATGGAAATTGCGTTGGCTTTGTTTGCTATTCACCTAGTCAGAGTTTTGAAGTACTTGACAGAGAAAAGGCTTCAACGATGGATGTAAAACAGGGCCATTTTCACCGCCATTTGTTGCTAAAATATGTTTCAGGTTTGAAGAAATATCTAAAGGGAAATGGGACTAATGAAACATCTTTGAGCAGATCTGAAAATAATGATGCTCAGGTGATGAATGAGCCACCCTTGTCTAGCAATAACAGTGAGGGGAGTTCATTTACTTTGGTACCACAGCGACAATCAGTGCAAAGAAATACCAGCTGGCCAAACCTTCGGCGGATATTTTTATCAAAGAGACATCTGAGAACAATGTCCATGACCGAGGACTTTTGTTCTTCACCTATTGCCTTTTCAGATCTGGAACATTGCAAATCTGATCTGGATCAATGTTCAAATGTTGACAGGGAGGATGCTTCTTTTCTGTCCGTCGAGGCTACTCCTCATCAATCTTTAGGGAGCCTTCCAGAAGGGTTATTGTCCTTGACTAATAAGTGCTCCTGCACTTGCAGATTATTCACCTATGAAGAACTTTTGTCAGCAACCTCAAACTTCATTCCCGAGAATATGGTGGGTAAAGGCGGTAGTAGCCATGTTTATAGAGGTTGTCTTCCAGATGGCAACGAACTGGCAGTGAAGATCTTAAAACCATCAGGAGATGTTCTGAAGGAGTTTGTTCAGGAAATTGAAATCATAACATCTTTACGTCATAAGAACATTATATCTTTGTCCGGCTTCTGTTTTGAGGATCCTAAATTACTATTGGTGTACAATTTTCTGTCAAGAGGGAGCTTAGAAGAGAATCTTCATGGTAATAAAAAGGATTCAAGTATATTCAGATGGCAAGAGAGATTTAAGGTTGCTCTTGGAGTAGCAGAGGCTGTAGACTATCTCCACCATGGTTGTGATGAACCTGTGATCCACAGAGACGTGAAGTCCTCTAACATTCTTCTCTCACAGGATTTCGAGGCGCAGGTATCTTGCTTTCTGTACCTCGCACCAGAGTACTTCATGTATGGGAAAGTAAGTGAGAAAATTGATATATATGCATTTGGTGTCGTACTCCTGGAACTACTTTCAGGTCGGAAGCCAATCAACAGCTACAATCCTAGGGGACAAGAAAACCTTGTAATGTGGGCTAGGCCAATATTGAAGGAAGGGAAAATTTCTCAGTTATTGGATCCTTGCCTAGGAAGTGATTACAACCAGGATCAGATAGGAAGAATGATATTAGCTGCCACCCTCTGCATTAGACGCTCCCCTAAGTTACGTCCCAAAATGGCTCTTGTTTTGAAACTTTTACAAGGCGATGAAGAAGTAAATAATTGGGCAATGCGGCAGGTTCATCAAATGGAAGAACTCGATGCCATTGATGGAGAACCATTAGCTTCTAACATACAATCCCACCTCAACCTTGTATTTGTAGATTTACATGACGATTCACTTTCGGTTAACAGCAACGAGCAATGCATCTCCGTAGAAGATTACTTGCGAGGGAGATGGAGCCGCTCATCTAGCTTCACTTAG 1749 43.11 MNLIGDAAVGESAVGSGRTVVVGVKLESECRELLTWTLLKVAQPGDLVIALHVLDAFTDKDGNGNCVGFVCYSPSQSFEVLDREKASTMDVKQGHFHRHLLLKYVSGLKKYLKGNGTNETSLSRSENNDAQVMNEPPLSSNNSEGSSFTLVPQRQSVQRNTSWPNLRRIFLSKRHLRTMSMTEDFCSSPIAFSDLEHCKSDLDQCSNVDREDASFLSVEATPHQSLGSLPEGLLSLTNKCSCTCRLFTYEELLSATSNFIPENMVGKGGSSHVYRGCLPDGNELAVKILKPSGDVLKEFVQEIEIITSLRHKNIISLSGFCFEDPKLLLVYNFLSRGSLEENLHGNKKDSSIFRWQERFKVALGVAEAVDYLHHGCDEPVIHRDVKSSNILLSQDFEAQVSCFLYLAPEYFMYGKVSEKIDIYAFGVVLLELLSGRKPINSYNPRGQENLVMWARPILKEGKISQLLDPCLGSDYNQDQIGRMILAATLCIRRSPKLRPKMALVLKLLQGDEEVNNWAMRQVHQMEELDAIDGEPLASNIQSHLNLVFVDLHDDSLSVNSNEQCISVEDYLRGRWSRSSSFT 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1593019 1596508 - Bpe006140.1 Bpe13g00054 112834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00054 582 Gene3D Transferase(Phosphotransferase) domain 1 402 527 - -
Bpe13g00054 582 Gene3D Transferase(Phosphotransferase) domain 1 334 401 - -
Bpe13g00054 582 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 14 59 - -
Bpe13g00054 582 PANTHER OS01G0253100 PROTEIN 148 403 IPR045271 GO:0004714|GO:0006468
Bpe13g00054 582 PANTHER OS01G0253100 PROTEIN 403 576 IPR045271 GO:0004714|GO:0006468
Bpe13g00054 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Bpe13g00054 582 Gene3D Phosphorylase Kinase; domain 1 233 333 - -
Bpe13g00054 582 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 403 576 - -
Bpe13g00054 582 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 148 403 - -
Bpe13g00054 582 MobiDBLite consensus disorder prediction 116 156 - -
Bpe13g00054 582 SMART serkin_6 259 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00054 582 Pfam Protein tyrosine and serine/threonine kinase 263 445 IPR001245 GO:0004672|GO:0006468
Bpe13g00054 582 ProSitePatterns Protein kinases ATP-binding region signature. 265 287 IPR017441 GO:0005524
Bpe13g00054 582 ProSiteProfiles Protein kinase domain profile. 259 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00054 582 SUPERFAMILY Protein kinase-like (PK-like) 241 508 IPR011009 -
Bpe13g00054 582 PANTHER OS01G0253100 PROTEIN 14 59 IPR045271 GO:0004714|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00054 - - - pop:7466756 550.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00305 Bpe13g00054 CCT
Bpe10g00266 Bpe13g00054 CCT
Bpe06g00305 Bpe13g00054 ECH
Bpe10g00266 Bpe13g00054 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00266 Bpe-Chr10:9956217 Bpe13g00054 Bpe-Chr13:1593019 0 dispersed
Bpe13g00054 Bpe-Chr13:1593019 Bpe13g01312 Bpe-Chr13:18259946 1.52E-71 dispersed
Bpe13g00054 Bpe-Chr13:1593019 Bpe06g00305 Bpe-Chr6:14360402 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63643 PF00069 Pkinase 2.70E-23 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00054 Bpe_Chr13 FPKM 52.412403 42.261906 49.399574 45.321831 35.428703 30.789186 44.516109 50.714382 59.61533 73.387749