Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00070 ATGGCGTTAGGAAAGTATAGTAGAATAGACAATCGAAGGTCATCATCGAGCTACTGCTCAACAGTTACAATTGTTGTTTTTGTGGCTCTATGCTTGGTGGGTGTTTGGATGATGACCTCTTCATCTGTAGGACCTGTTCAAAATGTCGATGTTCAGCAGGAGAACAAAGATGATGTTAAGCAACCAGTGATTGGAAACACTGGAAGCAATGCTCAGCAATTTGAAGACAATCCTGGGGATTTGCCTGAGGATGCTAGGAAAGGGGATAGTAGTGAAGATTCTTCTAATCAGGATGGAAGCAATTCTTCCGAACAAAATAATACAGAAGAAAATCAAGAGGGGAAGCCTGAAGAAAAAACTGAAGAGAAGCGTGAGGAGAGTTCTGAAGAAAAAAATAAAGAGGAAACTGGAAGAGATGAAAAACCAAAGTCAGAAGAGGGATCCAATTCTGAAACAGAAGCAGAAAGCAAAACCGATACTGATGAAACTAAAGACGAAAAGGGAGAATCAAATTCAGAATTGGGAGAGTCTAAGACTGAAAGCGAAGAAAGTGAGTCTGGTGGGCAGATTGAAAATGAGAATAGTTCTGAAGAAAAAAAAGCTGATGCAAGTGAAGAGGAGGAAAAATCTGAGGAAAGTGAGAAGAAATCAGAGAACTCAGATGAAGAAAAAGATAATAGTCAGATAGATGAGAAGGTCGAGCAAAATAACAACAGCAAATCAGATGAAACCACTGTTGACAATAACGAAAACAGTCAAAACCAGACTTCTACCGAAGTGTTTCCTTCTGGGGCTCAGTCTGAGCTATCAACTGAAAATTCTTTGCAAAGTGGTGCATGGTCTACCCAGGCATCGGAGTCAAAAAATGAAAAGGAAGCTCAAAAATCTTCTAAGCAACAGACTAAGTACAATTGGAAACTTTGCAATGTCACCGCTGGGACAGATTATATCCCATGCCTTGATAATTTGCAGGCTATTAAAAGTCTTCCAAGCACTAAGCATTATGAACATCGGGAGAGACACTGTCCAGAAGAGCCCCCTACTTGCCTTGTTCCACTTCCAGAAGGATATAAACGTTCTATTGCGTGGCCTAAAAGCAGGGATAAGATATGGTACTATAATGTTCCTCACACAAAGCTTGCTGAAGTCAAGGGACATCAAAATTGGGTGAAGGTGTCAGGTGAATTCCTTACTTTTCCAGGTGGAGGAACTCAATTTAAGCATGGTGCTCTTCACTACATTGACTTCATACAAGAGTCTGTGCCAGATGTTGCATGGGGCAAACAGACTCGTGTGATACTGGATGTTGGTTGTGGTGTTGCCAGCTTTGGAGGCTATCTATTTGAAAGAGATGTGCTAGCTATGTCATTTGCACCAAAAGATGAACATGAAGCCCAAGTTCAGTTCGCTCTTGAAAGGGGTATTCCAGCAGTAACTGCTGTAATGGGTACTACCAGACTTCCTTACCCTGGAAGAGTCTTTGATGCTGTCCACTGTGCTCGCTGTAGAGTTCCTTGGCATATAGAAGGTGGAAAACTTCTTTTGGAGCTCAATCGTGTATTGCGACCAGGTGGCTTCTTTGTGTGGTCTGCTACACCAGTCTATCAAAAGCTTCCGGAAGATGTTGAAATATGGAATGCCATGGGTGAACTTACAAAAGCTCTGTGTTGGGAACTTATATCAATTAACAAGGACACAGTAAATGGAGTGGGTGTTGCTCTATATAAGAAACCTACAAATAACGAGTGTTATGAAAAAAGACAGAAACAAGAGCCTCTGATTTGTTCAGATTCAGATGATATAAATGCAGCCTGGAACGTACCATTGCAAGCATGTATGCACAAAATTCCAGTGGGAGCATCACAACGTGGGTCCCAATGGCCAGAGCAATGGCCGCTAAGGTTGGAGAAACCACCTTACTGGTTATTGTCTTCCCAAGTAGGAGTTTATGGAAAAGCTGCTCCTGAGGATTTCACTTCAGATTATGAGCACTGGAAACGTGTGGTGATCAACTCCTACTTAAATGGGATCGGCGTAGATTGGAAATCTGTCCGGAATGTCATGGACATGAGATCGATCTACGGAGGGTTTGCTGCGTCTTTAAAAGATTTGAATGTTTGGGTTATGAATGTGGTCTCTATAGATGCCCCAGATACACTGCCTATTATCTACGACCGAGGCTTGTTCGGCATATACCACGACTGGTGTGAATCCTTCAGCACCTACCCAAGATCTTACGATCTTCTTCATGCTGATCATCTTTTCTCCAAGGTTAAAAAGAGGTGCAATCTAGTGGCTGTAGTTGCAGAGTGCGATAGAATCCTCAGACCTGAAGGAAAACTTATAATTCGGGACGATGCAGAGACGACCGTCGCGCTGGTAAACATGGCAAAATCAATGAAGTGGGAGGTCAGATTTTCTTACTTGAAGGACAATGAAGGATTGCTTTGTGTCCAGAAGTCAATATGGCGACCAACAGAGTCAGAAACACTCAAGTATGCCATTATTTAA 2511 42.29 MALGKYSRIDNRRSSSSYCSTVTIVVFVALCLVGVWMMTSSSVGPVQNVDVQQENKDDVKQPVIGNTGSNAQQFEDNPGDLPEDARKGDSSEDSSNQDGSNSSEQNNTEENQEGKPEEKTEEKREESSEEKNKEETGRDEKPKSEEGSNSETEAESKTDTDETKDEKGESNSELGESKTESEESESGGQIENENSSEEKKADASEEEEKSEESEKKSENSDEEKDNSQIDEKVEQNNNSKSDETTVDNNENSQNQTSTEVFPSGAQSELSTENSLQSGAWSTQASESKNEKEAQKSSKQQTKYNWKLCNVTAGTDYIPCLDNLQAIKSLPSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIAWPKSRDKIWYYNVPHTKLAEVKGHQNWVKVSGEFLTFPGGGTQFKHGALHYIDFIQESVPDVAWGKQTRVILDVGCGVASFGGYLFERDVLAMSFAPKDEHEAQVQFALERGIPAVTAVMGTTRLPYPGRVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKLPEDVEIWNAMGELTKALCWELISINKDTVNGVGVALYKKPTNNECYEKRQKQEPLICSDSDDINAAWNVPLQACMHKIPVGASQRGSQWPEQWPLRLEKPPYWLLSSQVGVYGKAAPEDFTSDYEHWKRVVINSYLNGIGVDWKSVRNVMDMRSIYGGFAASLKDLNVWVMNVVSIDAPDTLPIIYDRGLFGIYHDWCESFSTYPRSYDLLHADHLFSKVKKRCNLVAVVAECDRILRPEGKLIIRDDAETTVALVNMAKSMKWEVRFSYLKDNEGLLCVQKSIWRPTESETLKYAII 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2972243 2976576 - Bpe006162.1 Bpe13g00070 112850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00070 836 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 653 789 IPR029063 -
Bpe13g00070 836 MobiDBLite consensus disorder prediction 94 109 - -
Bpe13g00070 836 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 4 833 IPR004159 GO:0008168
Bpe13g00070 836 PANTHER PMT26-LIKE PROTEIN, PUTATIVE-RELATED 4 833 - -
Bpe13g00070 836 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 338 583 IPR029063 -
Bpe13g00070 836 MobiDBLite consensus disorder prediction 110 185 - -
Bpe13g00070 836 MobiDBLite consensus disorder prediction 54 299 - -
Bpe13g00070 836 MobiDBLite consensus disorder prediction 239 287 - -
Bpe13g00070 836 Gene3D Vaccinia Virus protein VP39 405 609 IPR029063 -
Bpe13g00070 836 Coils Coil 194 223 - -
Bpe13g00070 836 MobiDBLite consensus disorder prediction 192 238 - -
Bpe13g00070 836 CDD AdoMet_MTases 433 528 - -
Bpe13g00070 836 MobiDBLite consensus disorder prediction 79 93 - -
Bpe13g00070 836 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 315 819 IPR004159 GO:0008168
Bpe13g00070 836 MobiDBLite consensus disorder prediction 59 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00070 - - - jre:108996285 1202.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00070 Bpe-Chr13:2972243 Bpe15g01271 Bpe-Chr15:21135791 1.66E-158 dispersed
Bpe13g00070 Bpe-Chr13:2972243 Bpe15g00369 Bpe-Chr15:15224199 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1331 . . . . . Bpe13g00070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000953 3 2 4 3 4 2 4 2 2 3 2 2 4 2 2 4 2 6 4 2 3 2 2 2 2 2 2 5 3 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00070 Bpe_Chr13 FPKM 18.988155 19.489584 25.757168 25.010984 12.232959 11.57445 13.888644 53.839294 51.641415 57.940723