Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00079 ATGTCATCGTCCAATTCTCCATGCGCGGCCTGCAAGCTTCTGAGGCGTAAATGTCCGCAAGAGTGTGTGTTTGCACCGTATTTTCCACCAGATCAGCCTCAGAAATTCGCTAATGTTCATAAGGTGTTCGGCGCAAGCAACGTCTCCAAGCTACTCAATGAACTCGACGCTAGGCACCGTGAAGACGCAGTCAACTCTCTGGCGTACGAGGCGGAGTTTCGTCTCCGTGACCCAGTCTACGGCTGCGTCGGTCTGATCTCCGTTCTTCAGCACAGACTAAAGCAAATGCAGACCGATCTAATTAATGCCAAGAAAGAGCTCGCCAGCTACATCGGGTCTCAGGCAATTTTTCCTGTAATGCAACCTTCGACAGCGCTAATGGCGCAGCAACATCCAGGAAATCCTTCGTCTTCTTCTCTGATGCCTTATAACATGCCGCCCATGATGGGTATCCCGACGGGTCCTTCTGGGCAACTTATGATTCGTGAGCCTCATCAACAACAACCACAGCAGCAGCAACAGCAACACCAGCTTCATCAGCAACAGTTGTTTGAGGCTCAGCAATTGTCTGCAGCCATTGCGGCTAGAGAGCAGCAAGAGATGTTTAGGGCTTATGAGCAAAAACAACAACAAACTCACCACAGAGACCATCCCCAGCCACAGCAGCAAGAGCTTTTACGCTTGAATCCTGGGTTCGACGCAACCGCTTCAGTTTCCGCAAGTGGGTTTAATCAGCTGAATAACGCTTCTGCTTTATCACCTTCCTTAGCTCTGGGTACTTTTGATAACGCGTACCACCTTCAACCAGAGTTTTCGGAACATCCCCGCACCCACAATCATCATCAACTTCAGGCTCAGCTTTTGCTCCAACCGCAGCAGCCACAACCACCTAATCAGGGACAGCAATCACAGCTTCTGCAGCAGCATAAGACAGAAGATGAGGAAGATAGAATTGTCGGTCCCTCTCATTGA 972 50.1 MSSSNSPCAACKLLRRKCPQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELDARHREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHRLKQMQTDLINAKKELASYIGSQAIFPVMQPSTALMAQQHPGNPSSSSLMPYNMPPMMGIPTGPSGQLMIREPHQQQPQQQQQQHQLHQQQLFEAQQLSAAIAAREQQEMFRAYEQKQQQTHHRDHPQPQQQELLRLNPGFDATASVSASGFNQLNNASALSPSLALGTFDNAYHLQPEFSEHPRTHNHHQLQAQLLLQPQQPQPPNQGQQSQLLQQHKTEDEEDRIVGPSH 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4520189 4521160 + Bpe006172.1 Bpe13g00079 112859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00079 323 MobiDBLite consensus disorder prediction 288 307 - -
Bpe13g00079 323 MobiDBLite consensus disorder prediction 288 323 - -
Bpe13g00079 323 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Bpe13g00079 323 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 298 - -
Bpe13g00079 323 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 298 - -
Bpe13g00079 323 Coils Coil 86 106 - -
Bpe13g00079 323 MobiDBLite consensus disorder prediction 308 323 - -
Bpe13g00079 323 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01341 Bpe-Chr2:17034422 Bpe13g00079 Bpe-Chr13:4520189 1.51E-59 dispersed
Bpe07g00855 Bpe-Chr7:14679814 Bpe13g00079 Bpe-Chr13:4520189 3.93E-50 dispersed
Bpe13g00079 Bpe-Chr13:4520189 Bpe14g00045 Bpe-Chr14:687932 1.07E-51 dispersed
Bpe15g01223 Bpe-Chr15:20852868 Bpe13g00079 Bpe-Chr13:4520189 1.38E-43 dispersed
Bpe15g01233 Bpe-Chr15:20922408 Bpe13g00079 Bpe-Chr13:4520189 5.11E-45 dispersed
Bpe13g00079 Bpe-Chr13:4520189 Bpe15g00346 Bpe-Chr15:15008398 4.41E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22240 PF03195 LOB 2.00E-40 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00079 - - jre:109018950 376.326