Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00085 ATGGGTGCACCAAAGAAAGTTGGGTTGAGGATTTCTGACTACTCTGAGGAGTTGGCTCGTGTTTCCTTGCAGGCCATTCTTCTTGCTGATAGCTTTGCCACCAAGTTTCAGCCCATAACTCTCGAACGGCCTAAGGTATTACTTCCACTTGTGAATGTCCCAATGATAAATTATACCTTAGCATGGCTTGAATCTGCGGGCGTTGAAGAAGTTTTTGTATTTTGCTGTGCTCATTCAAGGCAAGTAATTGATTATTTGGAGAATTCTGAATGGTTCTCTCAACAAGAGTTCTCAGTCACAACAATAGAATCGCACAATTCTGTGAGTGCTGGAGATGCTCTGCGCTTGATCTATGAAAAGAATGTGATACATGGAGACTTTATTCTTATCACAGGAGATACAATAAGCAACATGTCACTTTCACAAGCTCTTCAGGAACACAAGGAAAGAAAGAAAAGAGATAGCAATGCAGTAATGACCATGATTATCAAACAATCGAAGCCTTCCCCTATCACTCACCAATCTCGTCTTGGTACTGATGAGCTGTTTATGGCAGTAGATCCTGACACTAAGCAACTACTATATTATGAAGATAGAGCGGACCAATCAAAAGGGGCTATATACCTTGATAAGTTATTGCTGATGGATAATCCTTTAATTTCTCTTCACAATGACAAACAGGATTGCTATATAGATATTTGTTCTCCAGAAGTCCTCAGTCTTTTCACAGATAATTTTGACTATCAGCATCTTCGACGTCACTTTGTCAAAGGATTGCTCGTTGATGATATCATGGGTTACAAGATCTTCACACATGATATTCACTCGAGCTATGCGGCTAGGATTGATAATTTTCGAAGCTATGACGCAATTAGCAAGGACATTATACAGAGGTGGTCGTATCCATTCGTTCCAGATGTTAAATTCTTTGGAAATTCCACGATAAAACTTGAAAGACAGGGGATGTATAGAGCTTCAGATATTAGGCAAGCTCGTTCTGCTCTAATAGGTCCTTCTACTGTTATTGGAAAGAACACTGAAATCGGGTGCAACACCAAAATTTCAAATTCAGTTGTTGGACAAGGATGCAAAATTGGATCCAACATTTTGATAGAAGGTTCTTACGTATGGGATAATGTTACTATCGAGGACGGCTGTAAACTAAGGCATGCAATTGTTTGCGATGGAGTGACCCTGAGATTGGGAGCTGAACTAGAACCTGGTGTTGTTTTGTCTTTCAATGTTATTATAGGTCAACAATTTGTTGTTCCTGCATATTCAAAGGTGTCATTATTTCAGCAACCAACCAAGCTAGATAGCGATGAGGAGCTGGAATATGCTGATAATAGCAGTGTTATTATTGAAAGTAATTATTATTACTATCTATTTTCCTTTTGGAATTTGTATGACTCTTTGAAATTGATGTCAACCAATCTTGGTACTGGTGGAGTTGGACATATATGGTCAGATTTTGAAGGAAACATTGAGGAAAGATGGAGGCACTCAGTTGCATCCATTCCAGCGAATAAAGTTGCTGAGGCGATGCAAGCCAGAGATGATGACTTTGAGTTGTCTGGTCAAGATGGAGGCCTTCTTCCTCCTTCAGGAGAGTTGAAACCCAGTTCCAATGATTCTGAAGATGATGATAATGAAGATTCTAGGGACGACTCCACTTACTTTGAAAAAGAGGTGGAAGCAACTTTCTTAAGAGCTGTGCACGAAAATATTAAAGTAGACAATGTAATTTTGGAAGTGAACTCCTTACGATTATCATATAATAAAGAAGCTGCGGATTGTGCTGGGGCAATATTTTTTTCATTAATAAAATATTCCCTAGAAACTCCACATAGTTCTGCTAGTGAATTGTTGCAAAATGCTACAAGTACAATTACAAAATGGAAAAAACTTCTCAAGTCTTACCTTGCTGACTTGGATGAGGAGATAGAAGTAATTTTGAAATTTGAAGAGATGTGTGTGGAATCTGCGAAGGAATTTAATCCATACTTCGGGAAGATATTGTGTCACTTGTACGACCAAGAAATAATTCATGAGGAGGCCATTTTACGATGGGAAGACGAGAAGAAGGACGCAGAGGAATCAGATAAAATTTTCGTCAAGCAATCTGAGAAATTTATACAATGGTTGAGAGAGGCATCAGAGGAGGAAGAAGAAGAGGGAGGAGATGAATTACAGAATCATTAA 2202 38.83 MGAPKKVGLRISDYSEELARVSLQAILLADSFATKFQPITLERPKVLLPLVNVPMINYTLAWLESAGVEEVFVFCCAHSRQVIDYLENSEWFSQQEFSVTTIESHNSVSAGDALRLIYEKNVIHGDFILITGDTISNMSLSQALQEHKERKKRDSNAVMTMIIKQSKPSPITHQSRLGTDELFMAVDPDTKQLLYYEDRADQSKGAIYLDKLLLMDNPLISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHDIHSSYAARIDNFRSYDAISKDIIQRWSYPFVPDVKFFGNSTIKLERQGMYRASDIRQARSALIGPSTVIGKNTEIGCNTKISNSVVGQGCKIGSNILIEGSYVWDNVTIEDGCKLRHAIVCDGVTLRLGAELEPGVVLSFNVIIGQQFVVPAYSKVSLFQQPTKLDSDEELEYADNSSVIIESNYYYYLFSFWNLYDSLKLMSTNLGTGGVGHIWSDFEGNIEERWRHSVASIPANKVAEAMQARDDDFELSGQDGGLLPPSGELKPSSNDSEDDDNEDSRDDSTYFEKEVEATFLRAVHENIKVDNVILEVNSLRLSYNKEAADCAGAIFFSLIKYSLETPHSSASELLQNATSTITKWKKLLKSYLADLDEEIEVILKFEEMCVESAKEFNPYFGKILCHLYDQEIIHEEAILRWEDEKKDAEESDKIFVKQSEKFIQWLREASEEEEEEGGDELQNH 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5643540 5651306 + Bpe006183.1 Bpe13g00085 112865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00085 733 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Bpe13g00085 733 Pfam eIF4-gamma/eIF5/eIF2-epsilon 646 725 IPR003307 GO:0005515
Bpe13g00085 733 Pfam Nucleotidyl transferase 25 168 IPR005835 GO:0009058|GO:0016779
Bpe13g00085 733 ProSiteProfiles W2 domain profile. 554 725 IPR003307 GO:0005515
Bpe13g00085 733 CDD W2_eIF2B_epsilon 560 719 IPR044123 GO:0005085|GO:0031369
Bpe13g00085 733 MobiDBLite consensus disorder prediction 523 557 - -
Bpe13g00085 733 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 12 304 IPR029044 -
Bpe13g00085 733 SMART 542_3 634 721 IPR003307 GO:0005515
Bpe13g00085 733 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 13 729 - -
Bpe13g00085 733 PANTHER - 13 729 - -
Bpe13g00085 733 Gene3D - 547 725 - -
Bpe13g00085 733 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 369 IPR029044 -
Bpe13g00085 733 SUPERFAMILY Trimeric LpxA-like enzymes 268 430 IPR011004 -
Bpe13g00085 733 SUPERFAMILY ARM repeat 560 718 IPR016024 -
Bpe13g00085 733 Gene3D Hexapeptide repeat proteins 305 455 - -
Bpe13g00085 733 CDD LbH_eIF2B_epsilon 341 419 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00682 Bpe-Chr9:15411694 Bpe13g00085 Bpe-Chr13:5643540 2.85E-08 dispersed
Bpe11g00971 Bpe-Chr11:7220536 Bpe13g00085 Bpe-Chr13:5643540 4.68E-13 dispersed
Bpe11g01274 Bpe-Chr11:9536996 Bpe13g00085 Bpe-Chr13:5643540 6.71E-08 dispersed
Bpe13g00085 Bpe-Chr13:5643540 Bpe15g00211 Bpe-Chr15:13194800 6.73E-08 dispersed
Bpe13g00085 Bpe-Chr13:5643540 Bpe08g01046 Bpe-Chr8:12655465 9.42E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00085 K03240 - mnt:21393535 1099.35