Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00099 AGGATGGACGGGGAAGACGAAGTGAGAGAGGCCATGGCGAAGAGGAGAGGAAAGGATAATCAGAGGCCGTACAAAGGGATTCGAATGAGAAAGTGGGGAAAATGGGTGGCTGAGATTCGAGAACCGAATAAACGCTCCAGAATTTGGCTCGGTTCGTACTCTTCGCCGGTGGCTGCAGCAAGGGCTTACGACACCGCCGTTTTCCACCTCAGAGGCCCATCGGCGCGCCTTAACTTCCCGGAGCTATTAGAGGCGGAAGGGTGTGGGATTTCCACCGGGGACGACATGTCAGCCGCTACAATAAGGAAGAAAGCCGCGGAGGTCGGAGCGAGAGTAGATGCCATCGAGAGTTCTCAGCACTACGATCGACCGTCGTGCGCGGTGGTTCCGCCGTCGTTGAAGAGCGGGGGTCGGTTCTCAGATCGGGTCGATTTGAACAAGGTGCCAGACCTGGAAGAGTCGGAGGGAGAGCGAGCGTGTATAGGAGAATAG 492 56.71 RMDGEDEVREAMAKRRGKDNQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPELLEAEGCGISTGDDMSAATIRKKAAEVGARVDAIESSQHYDRPSCAVVPPSLKSGGRFSDRVDLNKVPDLEESEGERACIGE 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6315264 6315755 + Bpe006200.1 Bpe13g00099 112879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00099 163 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Bpe13g00099 163 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Bpe13g00099 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 9 155 - -
Bpe13g00099 163 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Bpe13g00099 163 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Bpe13g00099 163 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Bpe13g00099 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 155 - -
Bpe13g00099 163 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Bpe13g00099 163 MobiDBLite consensus disorder prediction 1 23 - -
Bpe13g00099 163 Pfam AP2 domain 24 72 IPR001471 GO:0003700|GO:0006355
Bpe13g00099 163 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe13g00099 Bpe15g00328 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00031 Bpe-Chr5:611547 Bpe13g00099 Bpe-Chr13:6315264 9.64E-58 dispersed
Bpe13g00099 Bpe-Chr13:6315264 Bpe15g00328 Bpe-Chr15:14794749 9.06E-94 dispersed
Bpe06g00197 Bpe-Chr6:6660948 Bpe13g00099 Bpe-Chr13:6315264 7.76E-60 transposed
Bpe13g00099 Bpe-Chr13:6315264 Bpe02g00436 Bpe-Chr2:2846045 3.23E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22242 PF00847 AP2 9.90E-11 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00099 K09286 - csv:101214481 207.223