Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00136 ATGCTGATGTTTCAGCCTTCGAAGAGAGATGGCGTTGTTGGTTTTGACGGGGATGGAGCTGGGCATGTTCTAGATCTGGAAACGGCCGTAAAAGATGGGGTATTGGGTGGCATTGGCGGCGTTGATGGTATCGGAACCGGAGCTGTCGAGAAATTAGATCTGAAGAAGATGATTGAATATCTAAACTTATCCGAGGTGCCGTCGGTGTTCATCTGCCCCATCTCTCTCGAGCCATTGCAAGACCCAGTAACCCTTTGCACAGGCCAAACCTACGAGAGATCGAACATTCTCAAATGGTTCAATTTGGGGCATTACTCCTGCCCTACAACGATGCAGGAATTATGGGATGATTCTATTACTCCAAATACCACACTTTACCATCTAATCTACACTTGGTTTACCCAGAAGTATCTATTGATGAAGAAAAGGTCCGAAGACGTACAAGGAAGAACATCAGAAATTCTCAAAAACCTTAAAAAAGTGAAGGGCCAGGGCAGAGTTCAAGCGCTGAAGGAGCTCCGACAATTCGTGGCAGCTCATGGAACAGTCAAGAAAACAGTGATCGAGGAAGGAGGAATTTCTATTATTACATCATTATTAGGTCCTTTTACTTCTCACGCTGTTGGGGCTGAAGCCATTGGGATTCTTGTAAATTTGGAACTCGATTCGGACTCGAAAATGGATCTACTGCAGCCTGCAAAATTTTCTCTGGTAGTGGACATTTTAAACGAAGGTTCAATTGAAACAAAAACCAATTGTACCCTTCTGATCGAGAAGCTGATGGAAGATAAGGGTTTCCAGTCAGAAATTGTCTCACGCCACAGACTTTTAGTTGGACTAATGAGGCTGATCAAAGATAAGAGGCACCCAAATGGTGTCTATTCCGGACTCAAACTCCTCAAAAAAATCTGTGCGCATTTGGAAGTGAGGAATTTGGTCGTAAGCATCGGTGTCGTTCCACAATTGGTTGAAATATTACCTTCTCTTGGCCCTGAGAGGTTAGAGCTCGTACTCGTTATATTGGAAAACTTGTCGTCTCTACCTGAAGGAGGATTAGCATTAAAAGAGTGCTCAGAAACGATACCGAACATGGTGAAGCTCATTATGAGAGTCTCCGAGAGCTGTAGTCGATATGCGTTGTCAATCTTATCGGCTGTGTGCAAACTTGCCCCTGATGAATGTTCTTCTGTTGCCGTAGATGAAGGTCTGGCAGCTAAGCTCCTCCTTGTGATTCAAAGTGGGTGTGGGCCGGCTTTGAAGCAGCAATCTGCAGAGCTATTGAAGTTTTGTAGTCTAAATTATACAGATACAACATTCATTTCCAAGTGCAAGCTTTCAAGAACTATACAATGA 1353 43.9 MLMFQPSKRDGVVGFDGDGAGHVLDLETAVKDGVLGGIGGVDGIGTGAVEKLDLKKMIEYLNLSEVPSVFICPISLEPLQDPVTLCTGQTYERSNILKWFNLGHYSCPTTMQELWDDSITPNTTLYHLIYTWFTQKYLLMKKRSEDVQGRTSEILKNLKKVKGQGRVQALKELRQFVAAHGTVKKTVIEEGGISIITSLLGPFTSHAVGAEAIGILVNLELDSDSKMDLLQPAKFSLVVDILNEGSIETKTNCTLLIEKLMEDKGFQSEIVSRHRLLVGLMRLIKDKRHPNGVYSGLKLLKKICAHLEVRNLVVSIGVVPQLVEILPSLGPERLELVLVILENLSSLPEGGLALKECSETIPNMVKLIMRVSESCSRYALSILSAVCKLAPDECSSVAVDEGLAAKLLLVIQSGCGPALKQQSAELLKFCSLNYTDTTFISKCKLSRTIQ 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8477602 8478954 + Bpe006251.1 Bpe13g00136 112916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00136 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Bpe13g00136 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 39 449 - -
Bpe13g00136 450 Gene3D - 139 445 IPR011989 -
Bpe13g00136 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Bpe13g00136 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Bpe13g00136 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Bpe13g00136 450 SUPERFAMILY RING/U-box 63 136 - -
Bpe13g00136 450 PANTHER WDSAM1 PROTEIN 39 449 IPR045185 GO:0061630
Bpe13g00136 450 SUPERFAMILY ARM repeat 151 434 IPR016024 -
Bpe13g00136 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00017 Bpe-Chr5:412537 Bpe13g00136 Bpe-Chr13:8477602 0 dispersed
Bpe13g00136 Bpe-Chr13:8477602 Bpe08g01367 Bpe-Chr8:14743875 1.91E-32 dispersed
Bpe13g00136 Bpe-Chr13:8477602 Bpe15g00290 Bpe-Chr15:14388881 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00136 - - zju:107424993 668.692