Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00163 ATGGCTCCGGCGACTAACTGGCTGTCGTTCTCTTTATCTCCGGTTGAAATGATGAGGTCATCTGCTGAATCTCAGTTCATGCCCTACGAGACCTCTTCCACTGCTTCTCCTCACTATCTGCTCGATAACTTCTACGCGAATGGCTGGGCCAATCCCAAACAAGTTCAAAATTCTATTGATTCCCCTATTCTGACTAGCTTCATTGATCACCATAGCCAGAACCAAGGAGTACCGAAACTGGAAGACTTTCTCGGCGACTCGTCGCTGATGATTCGATTTTCCGAAAGCCAAACGGAGACTCAAGACTCGTCTTTAACCCAAATATACGACCATGGTTCGACATACTTTAATGACCACCAAGATCTCAAAGCTGTTACTGGGTTTCAAGCATTTTCAGCCAACTCGGGTTCAGAAGTAGATGACTCGGCCTCCATCGCTCGGAACCAGCTCGCGTGCGGCGAGTTCGCCGGTCATTCTATGGACTCATCCGGCACCGAGTTAGCTTTTACTAACTGTTCTACCGGTGCTCTTTCACTTGGGGTTGCTCGGAGCTCCGAGAAAGCAGTTGTTTCGGTAGAGTCTGATAGTTCGAAGAAGATTGCCGATACCTACGGCCAGCGAACTTCGATTTACAGAGTTCTGTGTGAATTTTCAGGTGGATATGACAAAGAAGATAAGGCAGCAAGAGCTTATGATCTAGCAGCTTTGAAATACTGGGGTCCTACTGCCACGACCAACTTTCCTGTCTCAAATTACGGTAAAGAATTGGAGGAGATGAAGCTTGTGACTAAGCAAGAATTCATTGCATCTCTCAGAAGGAAAAGTAGCGGTTTTTCGAGGGGAGCTTCAATTTATCGAGGGGTGACAAGGCACCATCAGCAGGGAAGGTGGCAAGCAAGAATAGGCCGTGTTGCCGGAAATAAGGATCTGTACCTCGGGACCTTTGCCACGGAAGAGGAGGCGGCAGAAGCTTACGACATTGCAGCCATAAAGTTCAGAGGTTTAAATGCGGTGACAAACTTTGAGATGGGACGATATGATGTTGAAGCTATTTCGAAGAGTAATCTACCCATTGGAGGAGCGGCTAAACGGTTAAAGCTCTCACTCGAATCCGAACAAAAGTCGTCTATTTTACACCATAGTTTACAGTCCCCGCGACTATGTGCTGGAAACAACATAAGTTTTGGCCCAATCCAACCTGTTCCGGCTATCCCGTCCGAAGCTTCTACGGCGATGCTTTATCATCACAACCTTTTCCACCACCTCCAGACCAATAGCCTTAGCACTTGCACCTCAGCCTCTAACCCTCTAATGGCTGCTCCGATGATCCCGATGCCACAGCAGGCTGAGTTTTTCGTCTGGCCTCATCAGTCCTAT 1377 47.93 MAPATNWLSFSLSPVEMMRSSAESQFMPYETSSTASPHYLLDNFYANGWANPKQVQNSIDSPILTSFIDHHSQNQGVPKLEDFLGDSSLMIRFSESQTETQDSSLTQIYDHGSTYFNDHQDLKAVTGFQAFSANSGSEVDDSASIARNQLACGEFAGHSMDSSGTELAFTNCSTGALSLGVARSSEKAVVSVESDSSKKIADTYGQRTSIYRVLCEFSGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYGKELEEMKLVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMGRYDVEAISKSNLPIGGAAKRLKLSLESEQKSSILHHSLQSPRLCAGNNISFGPIQPVPAIPSEASTAMLYHHNLFHHLQTNSLSTCTSASNPLMAAPMIPMPQQAEFFVWPHQSY 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9425966 9429527 - Bpe024929 Bpe13g00163 112943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00163 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 213 - -
Bpe13g00163 459 ProSiteProfiles AP2/ERF domain profile. 284 342 IPR001471 GO:0003700|GO:0006355
Bpe13g00163 459 SUPERFAMILY DNA-binding domain 283 343 IPR016177 GO:0003677
Bpe13g00163 459 CDD AP2 283 342 IPR001471 GO:0003700|GO:0006355
Bpe13g00163 459 SUPERFAMILY DNA-binding domain 218 250 IPR016177 GO:0003677
Bpe13g00163 459 SMART rav1_2 284 348 IPR001471 GO:0003700|GO:0006355
Bpe13g00163 459 SMART rav1_2 206 254 IPR001471 GO:0003700|GO:0006355
Bpe13g00163 459 ProSiteProfiles AP2/ERF domain profile. 177 248 IPR001471 GO:0003700|GO:0006355
Bpe13g00163 459 Pfam AP2 domain 284 334 IPR001471 GO:0003700|GO:0006355
Bpe13g00163 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 217 456 - -
Bpe13g00163 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 217 456 - -
Bpe13g00163 459 Gene3D AP2/ERF domain 199 250 IPR036955 GO:0003700|GO:0006355
Bpe13g00163 459 Gene3D AP2/ERF domain 284 343 IPR036955 GO:0003700|GO:0006355
Bpe13g00163 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 5 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00163 Bpe-Chr13:9425966 Bpe04g00142 Bpe-Chr4:956633 2.35E-72 dispersed
Bpe13g00163 Bpe-Chr13:9425966 Bpe15g00266 Bpe-Chr15:14018552 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22251 PF00847 AP2 1.70E-10 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00163 K09285 - qsu:112018242 625.55