Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00185 ATGGATCCTAGAAGACCTGCGAGTCCAGTATACGCGAGGCAGTGGAGTGGTGGTTCCAGCAGCACTGGTTCTTCGTCTCCGGTGATGTCCCCGGCGCATCCGCAGTCGAGGTTGGGTCCGTCTTCCACTATCAAGCGCGCTCAAAACGTTGCCGCTAAAAAGGCTGCGCAGCGCTTGGCTCAGGTCATGGCTACACAGGCACCTGACGACGACGACGAAGACGACGATCTTGACTTTCGCTTTGCTGCTCCTCCACCCTCTAGTCTCTCCTCGTACTCCACCAACGCTAATAGTATTGCTCCTAGCTCGTTTCCGACTATTAATGCACCCAGAGTTAATAGATCTCCATCCCCTGCGTTAGGTCGAAACTTTGTAGACCATGTTCCTGTGGTTCGATCGACATCAACTGGTAGGTCATCGATGTCTGTGCGTTCTGCCACAATTGTTCCACCGACCAAAACCACGCTCAAAACTCCAGTGTTTAAAGTGCAATTCTGCAAGTGCGTAATGAAATTCGGATTTTGTGACAGGTTCACACCGGATTCTGGAAAGATCAACTTAAAACATTCAGGAGATCAGCATGAAGCTTCTGCTCTTCGTGATGAACTTGATATGCTACAAGAAGAAAATGAAAATATACTCGAAAAGCTTCGACGAATGGAAGAAAGACGTAAAGAAGCAGAGGCCAGAGTTAAAATGCTGGAAATGCAGGTTGCCAATCTTGGAGAAGGAGTATCCTTGGAAGCTAAGTTGTTAAACAGAATTTATGAATTGGCACAGGCTGCGTTGAAGGCTGCAAAACAAAACAAGGATGGAAGAGATGAAGAAATGGCAGCCCTTCGTTCAGAACTGCAGAACTTAAAAGACGAGACTTCATTGGCTGAGGAACAGATACAAGAAGCAGAATCAGAGGGCAAGGCTCTTCGTAAAATGACACAGAGAATGATTTTGACTCAAGAAGAGATGGAGGAAGTTGTCTTGAAAAGATGTTGGCTTGCTCGTTACTGGGGTTTAGCTGTGCAGTACGGTAGTGCACTTTGCATTTCAGGTATATATGCTGATTTGGCAATTTTGAAACATGAGCACTGGTCCTCTTTGGCACCTCTCCCCTTTGAAGTTGTTATATCTGCTGGACAAAAGGCTAAGGAGGAGTCTTGGAACGGAGGTGGTGATGATACCAATAGGAGTAAAGTCATACGTGATTTGAATGATTTCAATGGAGAAGGAAATATTGAGAGTATGCTTTCAGTTGAAATGGGTTTGAGAGAATTGGCTTCTTTAAAGGTTGAAAATGCCCTTATGCTTGCCTTGGCGCAACATAGACGATCAAGTTCCATTCGACAACCCAGTTTTGGTATATTCTCACCTTTACATTTTCCATACTTAACAGATTCAAAACCATCCAGCGATCCCAAGTTTGCAGATGCATTTGAATTAAGTGATGCAGAGGCAGAAGATGTACTGTTTAAAGAGGCTTGGCTTACATACTTTTGGAGAAGAGCTAAGCTGCATGGTGTGGAGGAGGATGTTGCTGACGACCGGCTTCAGTTTTGGATTGGTCGCAGTGGGCAGTCCCCAACTTCACATGATGCCGTGAACGTTGAACGAGGTTTATTGGAGCTCAGAAAACTGGGAATAGAACAACAACTTTGGGAAGCATCAAGGAAGGAAATTGAACAATCCTCGGCTATTGCAGCTGCCAATCGCAAATCTATCCTAAGTATGCTGTCTCGAGTAAACGGAGTGGTTTGGATGGAAGGTGGAGAAGACGAAGACTCTGCTTCGTGGGTTAGAAACAAGGGTGTCTCAGGCGGCGGTGATGGCCAGCTCAACGGCGTCCACTGCGGTGATTTGGAGAACAAGGAGGAGATGAATTCTCTCTCCACCTTCAAATCTATGCTTGATGTGGAAGATGAATGGTACGTTTCTTGTAATAATCTTCAACCTCGGGGAGAAATTAGAGACATTATGTTTTCGCAATCCCTAGCTGATCCAGATAACCTTCTGCTCCATCCAGTGGATTCTTCGTCTTCCTGCTCTCCTTCTTCTTCGATGTTCAATAATCTCGACCCTTCTCAGGTACATTATCTTTTGCCGCCCAAACCTAATTTAGCTTCTCTCTTCAACGTAGTTTCTGCCACTCCTCTAGACCATGGATTTGATTTAGCTCCTGAGGTTGAGTTTCTGGAAACCCATACTTCGAATGCTGGTAATTTGCTCAACAGAGGAGCTGGGGTTCTAACTGGGTTTCCTGAAATCGGCCCGAACAACCAAATGGTTGCCCACAATTTGTATCCGGATCCTCAATTCACGGCCACCCGAATGCCCCAAATGCCGGAAAATTCATCTTCTTTCGCCGGATTTCAGAGTTTTGAAGAGAATTCTGGAAATGATGTGTTTCTAAGTAGGTCGAAATTACTGAGGCCCCTTGAATCATTCCCCTCAGCTGGGGCGCAGCCAACTCTTTTCCAGAAAAGGGTGGCTCTGCGAAAAAGTCTGGCCGGCGGCGCTCGTGGTTCGAACGAGATCGAGGGCGATAACGACGAGATCAGAAGATTGGTCGAACTGAGCGATAGGAAGAGGAAATTGGGCAATGGAGACGACTTCGACAATGGAAGCATTGATGGGTCTGGCTTGAATTATGATTCAGACGAGTTTACAGAGTACAAGGCCGAGGAGAATGCTAGAAATGGTGGGAACAGCTCAAATGCCAACAGTACTGTAACAGGAGGTGACCATAAAGGGAAGAAGAAGGGTCTTCCGGCCAAGAATTTGATGGCTGAACGGCGACGGAGGAAGAAGCTCAATGACAGGCTCTACATGCTGAGATCTGTAGTTCCAAAAATAAGCAAAATGGATAGGGCCTCAATCCTTGGGGATGCAATTGAGTACTTGAAGGAACTCTTGCAAAGAATCAATGATTTGCACAACGAATTGGAGTCAACCCCTCCCGGATCTGCCTTGACGCCCACTACGAGCTTCCATCCTCTAACTCCGACTCCACCAACTTTGCCGGCACGGATTAAGGAGGAAGTCTGCCCCAGCTCATTGTCGAGTCCAAACGGCCAACCTGCCAGGGTCGAAGTTAGGGTGAGGGAAGGAAGAGCTGTGAACATTCACATGTTTTGCGGCCGCAGTCCCGGTCTGCTACTCTCGACTATGAGAGTACTGGATAATCTCGGATTAGACATCCAACAAGCTGTCATCAGCTGCTTCAATGGTTTTGCCATGGACATCTTTCGAGCTGAGAGCAAGGAAGGGCAGGAGATCCATCCGGAGCAGATAAAAGCGATACTTCTAGAGTCGGCCGGATTCCACGGAATGATTTAG 3330 46.88 MDPRRPASPVYARQWSGGSSSTGSSSPVMSPAHPQSRLGPSSTIKRAQNVAAKKAAQRLAQVMATQAPDDDDEDDDLDFRFAAPPPSSLSSYSTNANSIAPSSFPTINAPRVNRSPSPALGRNFVDHVPVVRSTSTGRSSMSVRSATIVPPTKTTLKTPVFKVQFCKCVMKFGFCDRFTPDSGKINLKHSGDQHEASALRDELDMLQEENENILEKLRRMEERRKEAEARVKMLEMQVANLGEGVSLEAKLLNRIYELAQAALKAAKQNKDGRDEEMAALRSELQNLKDETSLAEEQIQEAESEGKALRKMTQRMILTQEEMEEVVLKRCWLARYWGLAVQYGSALCISGIYADLAILKHEHWSSLAPLPFEVVISAGQKAKEESWNGGGDDTNRSKVIRDLNDFNGEGNIESMLSVEMGLRELASLKVENALMLALAQHRRSSSIRQPSFGIFSPLHFPYLTDSKPSSDPKFADAFELSDAEAEDVLFKEAWLTYFWRRAKLHGVEEDVADDRLQFWIGRSGQSPTSHDAVNVERGLLELRKLGIEQQLWEASRKEIEQSSAIAAANRKSILSMLSRVNGVVWMEGGEDEDSASWVRNKGVSGGGDGQLNGVHCGDLENKEEMNSLSTFKSMLDVEDEWYVSCNNLQPRGEIRDIMFSQSLADPDNLLLHPVDSSSSCSPSSSMFNNLDPSQVHYLLPPKPNLASLFNVVSATPLDHGFDLAPEVEFLETHTSNAGNLLNRGAGVLTGFPEIGPNNQMVAHNLYPDPQFTATRMPQMPENSSSFAGFQSFEENSGNDVFLSRSKLLRPLESFPSAGAQPTLFQKRVALRKSLAGGARGSNEIEGDNDEIRRLVELSDRKRKLGNGDDFDNGSIDGSGLNYDSDEFTEYKAEENARNGGNSSNANSTVTGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSALTPTTSFHPLTPTPPTLPARIKEEVCPSSLSSPNGQPARVEVRVREGRAVNIHMFCGRSPGLLLSTMRVLDNLGLDIQQAVISCFNGFAMDIFRAESKEGQEIHPEQIKAILLESAGFHGMI 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9764489 9784353 - Bpe006305.1 Bpe13g00185 112965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00185 1109 MobiDBLite consensus disorder prediction 861 880 - -
Bpe13g00185 1109 MobiDBLite consensus disorder prediction 892 923 - -
Bpe13g00185 1109 MobiDBLite consensus disorder prediction 1 48 - -
Bpe13g00185 1109 CDD bHLH_AtAMS_like 922 986 - -
Bpe13g00185 1109 Gene3D - 913 982 IPR036638 GO:0046983
Bpe13g00185 1109 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 919 968 IPR011598 GO:0046983
Bpe13g00185 1109 PANTHER FAS-BINDING FACTOR-LIKE PROTEIN 1 562 IPR040321 GO:0000911
Bpe13g00185 1109 Coils Coil 196 244 - -
Bpe13g00185 1109 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 922 989 IPR036638 GO:0046983
Bpe13g00185 1109 Pfam Helix-loop-helix DNA-binding domain 926 968 IPR011598 GO:0046983
Bpe13g00185 1109 CDD ACT_UUR-ACR-like 1039 1098 - -
Bpe13g00185 1109 MobiDBLite consensus disorder prediction 13 48 - -
Bpe13g00185 1109 MobiDBLite consensus disorder prediction 894 910 - -
Bpe13g00185 1109 PANTHER MYOSIN 1 562 - -
Bpe13g00185 1109 MobiDBLite consensus disorder prediction 59 78 - -
Bpe13g00185 1109 Coils Coil 958 982 - -
Bpe13g00185 1109 Coils Coil 249 311 - -
Bpe13g00185 1109 SMART finulus 925 974 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00185 - - - mcha:111008730 722.235
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00185 Bpe15g00237 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00936 Bpe-Chr5:22293329 Bpe13g00185 Bpe-Chr13:9764489 0 dispersed
Bpe11g01352 Bpe-Chr11:10132020 Bpe13g00185 Bpe-Chr13:9764489 3.19E-117 dispersed
Bpe13g00185 Bpe-Chr13:9764489 Bpe14g00498 Bpe-Chr14:4422751 4.50E-26 dispersed
Bpe11g01470 Bpe-Chr11:10940220 Bpe13g00185 Bpe-Chr13:9764489 2.10E-107 transposed
Bpe15g00806 Bpe-Chr15:18248485 Bpe13g00185 Bpe-Chr13:9764489 9.06E-24 transposed
Bpe13g00185 Bpe-Chr13:9764489 Bpe15g00237 Bpe-Chr15:13634644 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g34 . Blo16g00288 . . . Bpe13g00185 Bma06g00282 . Cmo13g00860 . . . . . . Cpe20g00289 . . . . . . . . . . . . . . . . . Cone13ag0253 Cone19ag0238 Lsi02g00526 Csa01g00989 Chy12g01145 Cme12g01564 . . . . . Bpe15g00237 Bma03g01224 . Sed08g2408 . . Cma13g00829 Cma18g00295 Car13g00672 Car18g00248 Cpe09g00943 . Bhi08g01536 Tan05g3009 Cmetu12g2124 . Hepe07g2083 . . Cla03g00378 Cam03g0398 Cec03g0384 Cco03g0399 Clacu03g0397 Cmu03g1002 Cre03g0694 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011005 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22255 PF00010 HLH 4.90E-09 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00185 Bpe_Chr13 FPKM 5.523392 5.631765 12.106923 11.372197 35.673893 32.106842 32.795105 55.391018 62.549835 58.791473