Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00187 AACACGGCCTTTACCACCTTCCTAACAACCTCTCTAATGGCAGCCTTTTCCTCTCAGCACCTGCACCACCCTTTTCACCTCCTCCCTCCTTCTTTCCCAAACAACCCGACGTCGCCGAAAATGTCTGACACCACCGCAGATGATTTTTCTCAGTTTTACCACCCTCATCAGCCTAGCCCTCTTGGCCATGGCAGAGAGATTCAATTGCCTGATAACGAGAGTTCTTTAGCTTACAAACAAAGCAGCGAGTCCTCCATTGTTGTGGATAAAGTCGAAAGCGGAGAGCAGGTGACCCAGAAGATAAATTCAAAGGAGAAGAAGAGGAAGAAGAGAAATGGTTCAGTTTCCAGTTCTGTTCAGTTCAAGAGCAAAGCGGAAGGAAGAGGAACAAAGCAGAAGAAACAGAAGGATGAGAAGAAAGACGAGAAAGAAGTTGCAGAGGAAGCTCCTCCAACAGGCTATATTCATGTTAGAGCAAGGAGGGGTCAAGCTACCGACAGCCATAGCCTAGCAGAAAGGGTGAGGAGAGAGAAAATTAGTGAGAGAATGAAGATGTTGCAGAGACTTGTTCCAGGCTGTGACAAGGTTACTGGGAAGGCGCTAGTTTTGGATGAAATCATCAATTATGTTCAGTCCCTTCAAAACCAAGTAGAGTTCCTTTCCATGAAACTCGCCTCAGTAAACCCATTATCCTACCAGTTTGAACACGACCTGGATTCATTCATGGCCACAACAGAGGTATAG 744 46.24 NTAFTTFLTTSLMAAFSSQHLHHPFHLLPPSFPNNPTSPKMSDTTADDFSQFYHPHQPSPLGHGREIQLPDNESSLAYKQSSESSIVVDKVESGEQVTQKINSKEKKRKKRNGSVSSSVQFKSKAEGRGTKQKKQKDEKKDEKEVAEEAPPTGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPLSYQFEHDLDSFMATTEV 247
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 9819148 9820404 + Bpe006307.1 Bpe13g00187 112967
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00187 247 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 13 243 IPR024097 GO:0006355
Bpe13g00187 247 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Bpe13g00187 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Bpe13g00187 247 SMART finulus 169 219 IPR011598 GO:0046983
Bpe13g00187 247 MobiDBLite consensus disorder prediction 73 98 - -
Bpe13g00187 247 MobiDBLite consensus disorder prediction 28 152 - -
Bpe13g00187 247 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 13 243 - -
Bpe13g00187 247 MobiDBLite consensus disorder prediction 37 52 - -
Bpe13g00187 247 Gene3D - 160 232 IPR036638 GO:0046983
Bpe13g00187 247 CDD bHLH_AtBPE_like 153 229 - -
Bpe13g00187 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 230 IPR036638 GO:0046983
Bpe13g00187 247 MobiDBLite consensus disorder prediction 126 149 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00187 Bpe-Chr13:9819148 Bpe06g00416 Bpe-Chr6:15556085 2.53E-45 dispersed
Bpe13g00187 Bpe-Chr13:9819148 Bpe13g00756 Bpe-Chr13:14089584 1.80E-46 transposed
Bpe13g00187 Bpe-Chr13:9819148 Bpe10g00365 Bpe-Chr10:11243759 4.55E-47 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22256 PF00010 HLH 6.10E-07 No_clan Bpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00187 - - pvy:116135739 239.195