Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00195 ATGGAGGAGAAAAAATCAGAGGAGAAGAAACCGGCGGCGGCAGGGGAGGAGAAGAAAGAGGAAGAAAAGCAGAGCAAGAAGGCGGTGGAGGAGAAGAAGGAGGAGAAGAAAACGGAAGAAATCAAAGACGGGAAAGAAAATTCTCCTCCACCTCCGCCGGAAATTGTCCTCAAAGTTTATATGCATTGCGAAGGTTGCGCTCGCAAGGTCCGGCGAAGCCTCAAAGGCTTTGAAGGGGTTGAAGAGGTGGTGACTGATTGTAAGACGAATAAAGTGATTGTGAAAGGAGAAAAGGCGGATCCGATCAAGGTGTTGCAGAGAGTTCAGAGGAAGAGCCATAGACAGGTTGAGCTGCTCTCTCCCATTCCGAAGCCGCCGTCGCCGGAGGATAAGAAAGTCGAGGAGAAGGAAAAGCCAAAACCAGAGGAGAAGAAAGAAGAGCCTCGGATTATCACAGTTGTTCTAAGAGTTCACATGCATTGCGAGGGTTGTGCACAGGAAATCAAGAAACGCATACTGCGGATGAAAGAAGTAGAGTCAGCAGAAGCAGATTTAAAAACCTCAGAGGTGATTGTTAAAGGAGCATTCGACCCACAAAAGCTAGTCGAATACGTATACAAAAGAACAGGCAAACACGCAGTGATAGTGAAGCAGGAACCAGAGAAGAAGGAGAAAGAAGAAGGAAAAGAATCGAAGGAAGAGAAAAAGAGCGAAAATGGAGGTGAGAAAGAGAAGAAGAAGGAGGAAGAGAATAAAGAGAAGAGAGAAGGAGAAACAGAGGGAAAAAAAGAAGAATCCGCCATTGAAGCAACCAAGGTGGTGGAGCTGAAGAAGAACGAGTATTACTATTACCCACAACAACCGTATGCTATGGAAATGACATATCCATATCCACCACAGATGTTCAGCGATGAAAACCCTAATGCCTGTTCAGTTATGACAAATTTTTCGCCCTTTGGGCGACTGATCGCACCTTCTTCCACCCTTGGGGCGACTGATCACCCTTTTTGGGGCGATACATCATCTTATTTTCTGGATGGGGTGATGCAAAACTGCTATGGGGCATATGCATCTGTGGTGGCCATTGAAAGCGAATCCAAGTTAGACGATGAGCAGTGGCTTGCGTACTGGATCATATACTCATTTCTCTCCCTCACGGAGATGCTTCTGCAACCAGTTCTAGACTGGATACCAGTCTGGTACAGTTTAAAGCTGGTGGCAATGGCGTGGCTAGTTCTACCGCAGTTTAGAGGCGCAGCTTTTATATACGAGAGGTTAGTGAGAGAGACAATAAGAAAACATGGTTTTAGAGATAAACAGAAGAAGTCTCCTTCTGGTAAAAGCAAGTTTGTCGATTCCATTACTCCTAACAAAGTAAGTTTTACTGTTTATCAATAA 1398 45.28 MEEKKSEEKKPAAAGEEKKEEEKQSKKAVEEKKEEKKTEEIKDGKENSPPPPPEIVLKVYMHCEGCARKVRRSLKGFEGVEEVVTDCKTNKVIVKGEKADPIKVLQRVQRKSHRQVELLSPIPKPPSPEDKKVEEKEKPKPEEKKEEPRIITVVLRVHMHCEGCAQEIKKRILRMKEVESAEADLKTSEVIVKGAFDPQKLVEYVYKRTGKHAVIVKQEPEKKEKEEGKESKEEKKSENGGEKEKKKEEENKEKREGETEGKKEESAIEATKVVELKKNEYYYYPQQPYAMEMTYPYPPQMFSDENPNACSVMTNFSPFGRLIAPSSTLGATDHPFWGDTSSYFLDGVMQNCYGAYASVVAIESESKLDDEQWLAYWIIYSFLSLTEMLLQPVLDWIPVWYSLKLVAMAWLVLPQFRGAAFIYERLVRETIRKHGFRDKQKKSPSGKSKFVDSITPNKVSFTVYQ 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9903884 9922744 - Bpe006316.2 Bpe13g00195 112975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00195 465 ProSiteProfiles Heavy-metal-associated domain profile. 159 205 IPR006121 GO:0046872
Bpe13g00195 465 MobiDBLite consensus disorder prediction 1 47 - -
Bpe13g00195 465 Pfam TB2/DP1, HVA22 family 355 429 IPR004345 -
Bpe13g00195 465 Coils Coil 12 39 - -
Bpe13g00195 465 Gene3D - 148 216 - -
Bpe13g00195 465 Gene3D - 52 124 - -
Bpe13g00195 465 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 7 313 IPR044577 GO:0046872
Bpe13g00195 465 MobiDBLite consensus disorder prediction 1 55 - -
Bpe13g00195 465 CDD HMA 154 213 IPR006121 GO:0046872
Bpe13g00195 465 MobiDBLite consensus disorder prediction 127 146 - -
Bpe13g00195 465 ProSiteProfiles Heavy-metal-associated domain profile. 61 117 IPR006121 GO:0046872
Bpe13g00195 465 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 7 313 - -
Bpe13g00195 465 Coils Coil 232 252 - -
Bpe13g00195 465 SUPERFAMILY HMA, heavy metal-associated domain 55 111 IPR036163 GO:0046872
Bpe13g00195 465 Pfam Heavy-metal-associated domain 154 211 IPR006121 GO:0046872
Bpe13g00195 465 Pfam Heavy-metal-associated domain 58 109 IPR006121 GO:0046872
Bpe13g00195 465 MobiDBLite consensus disorder prediction 217 266 - -
Bpe13g00195 465 SUPERFAMILY HMA, heavy metal-associated domain 152 215 IPR036163 GO:0046872
Bpe13g00195 465 MobiDBLite consensus disorder prediction 113 146 - -
Bpe13g00195 465 CDD HMA 56 117 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00195 - - - pvy:116125923 333.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00195 Bpe15g00227 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01004 Bpe-Chr11:7461918 Bpe13g00195 Bpe-Chr13:9903884 4.76E-08 dispersed
Bpe13g00285 Bpe-Chr13:10730558 Bpe13g00195 Bpe-Chr13:9903884 3.54E-23 dispersed
Bpe15g00606 Bpe-Chr15:16965142 Bpe13g00195 Bpe-Chr13:9903884 7.22E-22 dispersed
Bpe15g00227 Bpe-Chr15:13425195 Bpe13g00195 Bpe-Chr13:9903884 5.93E-49 transposed
Bpe13g00195 Bpe-Chr13:9903884 Bpe15g00226 Bpe-Chr15:13398686 2.08E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g80 . . . . . Bpe13g00195 . . . . Cma10g00049 Cma11g00023 Car10g00038 . Sed08g0020 . . Bhi02g00663 Tan09g2392 Cmetu02g1141 . . . . Cla06g01756 Cam06g1948 Cec06g1997 Cco06g2003 Clacu06g1905 Cmu06g1845 Cre06g2659 . Cone16ag0005 . . . . . . . . . Bda14g01350 . Bpe15g00227 Bma03g01244 . . Cmo10g00044 . . . . . . Cpe18g00917 . . . . . . . . . . . . . . Lsi06g01655 Csa01g00041 Chy02g02677 Cme02g02081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001843 2 2 2 2 2 2 4 2 2 2 2 2 4 2 2 3 2 1 4 2 2 2 1 2 2 2 2 3 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00195 Bpe_Chr13 FPKM 5.181275 5.579191 12.419462 11.865901 2.70923 2.350477 2.595178 31.697197 31.271008 30.805803