Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00200 TGGCCGAAATCCAGGGAAGCAACCGCAAGAACCATCTCTACGGCCACCCAAATGGAGAGCAACCAGCAAGCTCAGTCCTCTCCGTACCCACCTGCGCAGCCTCCTCCTCCGCCGCCTCCTCAGCCATCTCAATTTCATCACCTTCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAAGAAATCGAACAGGTTAACGAGTTTAAAAATCACCAGTTACCCTTGGCTCGAATCAAGAAGATCATGAAAGCAGATGAGGATGTGCGTATGATCTCCTCAGAAGCCCCGATTCTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTGGAACTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAACAAGAGGAGGACTCTGCAGAAGAATGATATATCGGCAGCGATTACGAGGACTGATATCTTCGATTTTTTGGTGGATATTGTTCCGAGAGATGAGATCAAGGACGAGGCTGGGTTGGAGAGTGTGGTTGGGGCAACTGCTAGTGGCGTACCCTACTATTACCCTCCTTTGGGACAGCCGGCTGGGGCTCCGGCTGGGATGATGATCGGAAGACCAGCAATGGATCCCACCGGGATGTACATGCAGCCTCCGTCTCAAGCGTGGCAGTCAGTATGGCAGGCGCCGCCGGAGGATGGGACGTATGGGAGCGGCGGAAACACTGGGCTTGGCAATCTTAATGGACAAAGAGAGTTCGCCAAAGACAGCGTTCGTCTCGTTAAGAGGTGTCACAAGCCTGATCGCAAAGAATTTACCAAGGTTGCCTTTCGTACGGCGATTGGCTTTGTCGTGATGGGCTTCGTTGGATTCTTCGTCAAGTTGATCTTCATTCCGATCAATAACATCATCGTCGGTTCTGGTTAG 897 52.84 WPKSREATARTISTATQMESNQQAQSSPYPPAQPPPPPPPQPSQFHHLLQQQQQQLQMFWSYQRQEIEQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDEAGLESVVGATASGVPYYYPPLGQPAGAPAGMMIGRPAMDPTGMYMQPPSQAWQSVWQAPPEDGTYGSGGNTGLGNLNGQREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9976332 9985638 + Bpe006321.1 Bpe13g00200 112980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00200 298 MobiDBLite consensus disorder prediction 28 44 - -
Bpe13g00200 298 ProSitePatterns Protein secE/sec61-gamma signature. 243 271 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe13g00200 298 MobiDBLite consensus disorder prediction 7 27 - -
Bpe13g00200 298 Hamap Protein translocase subunit SecE [secE]. 238 293 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe13g00200 298 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 77 140 IPR003958 -
Bpe13g00200 298 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 20 240 - -
Bpe13g00200 298 MobiDBLite consensus disorder prediction 1 45 - -
Bpe13g00200 298 SUPERFAMILY Histone-fold 36 149 IPR009072 GO:0046982
Bpe13g00200 298 Pfam SecE/Sec61-gamma subunits of protein translocation complex 242 294 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe13g00200 298 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 240 295 IPR008158 GO:0008320|GO:0015031|GO:0016020
Bpe13g00200 298 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 20 240 - -
Bpe13g00200 298 SUPERFAMILY Preprotein translocase SecE subunit 237 294 IPR023391 -
Bpe13g00200 298 Gene3D Histone, subunit A 43 155 IPR009072 GO:0046982
Bpe13g00200 298 Gene3D Preprotein translocase SecE subunit 238 297 IPR023391 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00200 - - - csv:101213576 317.775
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00200 Bpe15g00222 CCT
Bpe07g00892 Bpe13g00200 CCT
Bpe07g00892 Bpe13g00200 ECH
Bpe13g00200 Bpe15g00222 ECH
Bpe12g00479 Bpe13g00200 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01366 Bpe-Chr11:10229589 Bpe13g00200 Bpe-Chr13:9976332 9.43E-62 dispersed
Bpe12g00479 Bpe-Chr12:10559664 Bpe13g00200 Bpe-Chr13:9976332 1.25E-37 dispersed
Bpe13g00200 Bpe-Chr13:9976332 Bpe15g00914 Bpe-Chr15:18944838 3.76E-69 dispersed
Bpe01g00338 Bpe-Chr1:2125765 Bpe13g00200 Bpe-Chr13:9976332 8.20E-11 transposed
Bpe13g00200 Bpe-Chr13:9976332 Bpe15g00222 Bpe-Chr15:13346986 0 wgd
Bpe13g00200 Bpe-Chr13:9976332 Bpe07g00892 Bpe-Chr7:14974056 1.11E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g101 . Blo16g00272 Bda06g00725 . Bpe12g00479 Bpe13g00200 Bma06g00261 Bma12g01083 Cmo13g00841 Cmo18g00222 . . . . . Cpe20g00303 . Bhi02g00520 . . . . . . . . . . . . . Cone2ag0981 Cone16ag0015 Cone13ag0226 Cone19ag0211 Lsi02g00510 Csa01g00972 Chy12g01161 Cme12g01585 . Blo15g00206 Bda11g01596 Bda14g01358 Bpe07g00892 Bpe15g00222 Bma03g01251 . Sed08g2430 . . Cma13g00811 Cma18g00314 Car13g00657 Car18g00233 Cpe09g00957 . Bhi08g01503 Tan05g2975 Cmetu12g2007 Lac10g0589 Hepe07g2115 . . Cla03g00359 Cam03g0379 Cec03g0365 . Clacu03g0378 Cmu03g0983 Cre03g0675 Lsi06g01644 Csa01g00053 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00222 BCT,CCT,ECH 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 76.4 7.8e-73 270.4
Bpe13g00200 BCT,CCT,ECH 56 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 75.9 8.6e-72 266.9
Bpe15g00914 . 72 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 67.1 1.6e-54 209.5
Bpe12g00039 . 81 216 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.8 1.9e-50 196.1
Bpe11g01366 . 71 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 2.1e-49 192.6
Bpe11g01366 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 77.5 4.0e-53 204.9
Bpe15g00914 . 52 245 CCAAT-HAP5 Transcription Factor Family AT1G08970 57.3 2.9e-48 188.7
Bpe12g00039 . 25 179 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 1.9e-47 186.0
Bpe13g00200 BCT,CCT,ECH 56 154 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.0e-41 166.0
Bpe15g00222 BCT,CCT,ECH 35 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.0e-41 166.0
Bpe15g00914 . 56 247 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.3 1.2e-54 209.9
Bpe11g01366 . 23 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.0 8.3e-53 203.8
Bpe12g00039 . 27 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 2.1e-51 199.1
Bpe15g00222 BCT,CCT,ECH 35 172 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.5 1.2e-48 189.9
Bpe13g00200 BCT,CCT,ECH 56 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.6 6.2e-48 187.6
Bpe15g00222 BCT,CCT,ECH 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.6 4.9e-65 244.6
Bpe13g00200 BCT,CCT,ECH 56 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.1 1.9e-64 242.7
Bpe15g00914 . 72 227 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.0 8.1e-52 200.7
Bpe12g00039 . 81 210 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.7 3.5e-47 185.3
Bpe11g01366 . 71 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 2.1e-44 176.0
Bpe12g00039 . 46 209 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.2 8.1e-63 236.9
Bpe15g00914 . 50 198 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.5 5.8e-61 230.7
Bpe15g00222 BCT,CCT,ECH 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.4 3.0e-49 191.8
Bpe11g01366 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 1.1e-48 189.9
Bpe13g00200 BCT,CCT,ECH 56 179 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.2 3.3e-48 188.3
Bpe04g01628 . 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 55.0 7.5e-65 244.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22258 PF00808 CBFD_NFYB_HMF 1.00E-17 CL0012 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00200 Bpe_Chr13 FPKM 17.231901 16.178923 16.95166 17.518274 24.372503 27.493052 25.532066 4.11313 3.875811 3.867102