Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00200 TGGCCGAAATCCAGGGAAGCAACCGCAAGAACCATCTCTACGGCCACCCAAATGGAGAGCAACCAGCAAGCTCAGTCCTCTCCGTACCCACCTGCGCAGCCTCCTCCTCCGCCGCCTCCTCAGCCATCTCAATTTCATCACCTTCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAAGAAATCGAACAGGTTAACGAGTTTAAAAATCACCAGTTACCCTTGGCTCGAATCAAGAAGATCATGAAAGCAGATGAGGATGTGCGTATGATCTCCTCAGAAGCCCCGATTCTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTGGAACTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAACAAGAGGAGGACTCTGCAGAAGAATGATATATCGGCAGCGATTACGAGGACTGATATCTTCGATTTTTTGGTGGATATTGTTCCGAGAGATGAGATCAAGGACGAGGCTGGGTTGGAGAGTGTGGTTGGGGCAACTGCTAGTGGCGTACCCTACTATTACCCTCCTTTGGGACAGCCGGCTGGGGCTCCGGCTGGGATGATGATCGGAAGACCAGCAATGGATCCCACCGGGATGTACATGCAGCCTCCGTCTCAAGCGTGGCAGTCAGTATGGCAGGCGCCGCCGGAGGATGGGACGTATGGGAGCGGCGGAAACACTGGGCTTGGCAATCTTAATGGACAAAGAGAGTTCGCCAAAGACAGCGTTCGTCTCGTTAAGAGGTGTCACAAGCCTGATCGCAAAGAATTTACCAAGGTTGCCTTTCGTACGGCGATTGGCTTTGTCGTGATGGGCTTCGTTGGATTCTTCGTCAAGTTGATCTTCATTCCGATCAATAACATCATCGTCGGTTCTGGTTAG 897 52.84 WPKSREATARTISTATQMESNQQAQSSPYPPAQPPPPPPPQPSQFHHLLQQQQQQLQMFWSYQRQEIEQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDEAGLESVVGATASGVPYYYPPLGQPAGAPAGMMIGRPAMDPTGMYMQPPSQAWQSVWQAPPEDGTYGSGGNTGLGNLNGQREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9976332 9985638 + Bpe006321.1 Bpe13g00200 112980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00200 298 MobiDBLite consensus disorder prediction 28 44 - -
Bpe13g00200 298 ProSitePatterns Protein secE/sec61-gamma signature. 243 271 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe13g00200 298 MobiDBLite consensus disorder prediction 7 27 - -
Bpe13g00200 298 Hamap Protein translocase subunit SecE [secE]. 238 293 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe13g00200 298 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 77 140 IPR003958 -
Bpe13g00200 298 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 20 240 - -
Bpe13g00200 298 MobiDBLite consensus disorder prediction 1 45 - -
Bpe13g00200 298 SUPERFAMILY Histone-fold 36 149 IPR009072 GO:0046982
Bpe13g00200 298 Pfam SecE/Sec61-gamma subunits of protein translocation complex 242 294 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bpe13g00200 298 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 240 295 IPR008158 GO:0008320|GO:0015031|GO:0016020
Bpe13g00200 298 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 20 240 - -
Bpe13g00200 298 SUPERFAMILY Preprotein translocase SecE subunit 237 294 IPR023391 -
Bpe13g00200 298 Gene3D Histone, subunit A 43 155 IPR009072 GO:0046982
Bpe13g00200 298 Gene3D Preprotein translocase SecE subunit 238 297 IPR023391 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe13g00200 Bpe15g00222 CCT
Bpe07g00892 Bpe13g00200 CCT
Bpe07g00892 Bpe13g00200 ECH
Bpe13g00200 Bpe15g00222 ECH
Bpe12g00479 Bpe13g00200 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01366 Bpe-Chr11:10229589 Bpe13g00200 Bpe-Chr13:9976332 9.43E-62 dispersed
Bpe12g00479 Bpe-Chr12:10559664 Bpe13g00200 Bpe-Chr13:9976332 1.25E-37 dispersed
Bpe13g00200 Bpe-Chr13:9976332 Bpe15g00914 Bpe-Chr15:18944838 3.76E-69 dispersed
Bpe01g00338 Bpe-Chr1:2125765 Bpe13g00200 Bpe-Chr13:9976332 8.20E-11 transposed
Bpe13g00200 Bpe-Chr13:9976332 Bpe15g00222 Bpe-Chr15:13346986 0 wgd
Bpe13g00200 Bpe-Chr13:9976332 Bpe07g00892 Bpe-Chr7:14974056 1.11E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22258 PF00808 CBFD_NFYB_HMF 1.00E-17 CL0012 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00200 - - csv:101213576 317.775