Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00201 CTGGCTCCAATGGCGGCCGCTACTCCTACCTCCTCTTTCTCCAAGATTGCTCCTTTCCCTATGTCGGCCAAATCTTCGAAACTCCCTTCCAACCCCTTTGTCCCCCTTTCCTCTTTCCATTATAGATTCGCCCTCCGCCGAGGCCTCCATTTATCCAATTCTCTCTCTAACCCCAATCCCAAATCGTCTACTTCCGCCGCCGCTTCTGCCACTGCAACTTCCTCAAGTATCGCTCCGGTTATATCGTCGAACCCGGAAGCCTTTACTTCCCGATTTTCCCCTGACGAGCCCAGAAAAGGCGCCGATGTCCTCGTGGAAGCGCTTGAACGGCAAGGGGTCACTGATGTGTTTGCTTACCCTGGAGGAGCTTCGATGGAGATCCACCAAGCCCTCACTCGCTCTTCTATTATTCGCAACGTCCTCCCTCGCCACGAGCAGGGCGGCATCTTTGCTGCCGAGGGGTATGCACGCTCATCCGGCCTTCCAGGTGTATGCATTGCCACTTCGGGCCCCGGAGCCACCAATTTGGTCAGTGGGCTCGCCGATGCTTTGCTTGATAGCGTCCCGATCGTAGCCATTACGGGTCAAGTCCCACGTCGAATGATTGGTACTGATGCGTTTCAGGAAACTCCGATTGTTGAGGTAACCCGGTCAATCACAAAGCATAATTACCTTGTTCTAGATGTAGAAGATATTCCTAGGGTAGTGAATGAGGCGTTCTTCTTAGCTACTTCCGGACGGCCTGGTCCTGTTCTCATTGATGTACCGAAAGATATACAACAACAACTAGTGGTTCCTAATTGGAATCAGTCTATGAAATTGCCCGGGTACATTTCTAGGCTGCCTAAGCCACCCTGTGAGAGCCATTTGGAACAGATTGTGAGACTTATTTCAGAATCGAAGAAGCCCGTTTTATATGTGGGTGGTGGGTGTTTGAATTCAAGTGAGGAATTGAGACAGTTCGTCAATTTCACAGGAATTCCTGTTGCTAGTACTCTAATGGGTCTTGGAGCTTTTCCTTGTCAGGATGACTTATCTCTCCAAATGCTGGGTATGCATGGAACTGTTTATGCAAACTATGCAGTGGATAAAGCTGATTTGTTACTTGCATTTGGCGTAAGGTTTGATGATCGAGTGACGGGAAAGTTGGAAGCTTTTGCTAGCCGTGCCAAAATAGTCCATATTGATATTGATTCAGCTGAGATTGGGAAGAACAAGCAGCCACACGTGTCAGTTTGTGCAGATGTGAAAGTGGCATTGAGAGGAATGAACCAGATTCTTGAGGGAAAAAGAGCCAACCTTAACCTTGACTTTTCAGCTTGGAGGGAGGAGCTAAATGAGCTGAAAACAACATATCCATTAAGCTTTAAAACATTTGGAGAAGCCATTCCTCCTCAATATGCAATTCAGGTTCTAGACGAATTGACCAATGGCAATGCCATTATAAGTACCGGTGTGGGGCAGCATCAGATGTGGGCTGCTCAATTTTACAAGTATAGGAAGCCTCGTCGATGGTTAACATCAGGGGGTTTGGGAGCCATGGGCTTCGGATTGCCTGCTGCCATTGGAGCTGCTGTTGCCAATCCTGATGCCATAGTTGTTGACATCGATGGTGATGGAAGTTTTATTATGAATGTCCAAGAGTTAGCCACCATCAAAGTAGAGAAGCTTCCCATCAAGATAATGCTTCTGAACAATCAACACTTGGGTATGGTGGTGCAGTGGGAGGATCGCTTCTACAAGGCTAATAGAGCTCACACCTACCTAGGAAACCCAGAAAAAGAGTCAGAAATATTTCCCAATATGTTGAAATTCGCTGAGGCTTGTGAAATACCTGCTGCTCGTGTGATGAGGAAAGAAGATCTTAGAGAAGCTATCCAGAAAATGTTAGACACTCCTGGGCCTTATTTATTGGATGTAATTGTACCTCATCAAGAGCATGTCCTGCCTATGATACCGAGCGGTGGAGCTTTCAAGGATGTGATCACAGAGGGTGATGGAAGAGTATCTTATTAG 2016 47.32 LAPMAAATPTSSFSKIAPFPMSAKSSKLPSNPFVPLSSFHYRFALRRGLHLSNSLSNPNPKSSTSAAASATATSSSIAPVISSNPEAFTSRFSPDEPRKGADVLVEALERQGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVVNEAFFLATSGRPGPVLIDVPKDIQQQLVVPNWNQSMKLPGYISRLPKPPCESHLEQIVRLISESKKPVLYVGGGCLNSSEELRQFVNFTGIPVASTLMGLGAFPCQDDLSLQMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADVKVALRGMNQILEGKRANLNLDFSAWREELNELKTTYPLSFKTFGEAIPPQYAIQVLDELTNGNAIISTGVGQHQMWAAQFYKYRKPRRWLTSGGLGAMGFGLPAAIGAAVANPDAIVVDIDGDGSFIMNVQELATIKVEKLPIKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPEKESEIFPNMLKFAEACEIPAARVMRKEDLREAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRVSY 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9993632 9995647 + Bpe006322.1 Bpe13g00201 112981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00201 671 Coils Coil 431 451 - -
Bpe13g00201 671 Gene3D - 455 641 - -
Bpe13g00201 671 Gene3D - 87 281 - -
Bpe13g00201 671 Pfam Thiamine pyrophosphate enzyme, central domain 291 421 IPR012000 GO:0000287|GO:0030976
Bpe13g00201 671 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 99 263 IPR012001 GO:0030976
Bpe13g00201 671 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 99 663 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Bpe13g00201 671 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 485 640 IPR011766 GO:0003824|GO:0030976
Bpe13g00201 671 Gene3D - 290 454 - -
Bpe13g00201 671 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 95 273 IPR029061 -
Bpe13g00201 671 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 463 664 IPR029061 -
Bpe13g00201 671 ProSitePatterns Thiamine pyrophosphate enzymes signature. 522 541 IPR000399 GO:0000287|GO:0030976
Bpe13g00201 671 CDD TPP_PYR_POX_like 102 257 - -
Bpe13g00201 671 CDD TPP_AHAS 463 655 IPR039368 GO:0030976
Bpe13g00201 671 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 65 670 IPR045229 -
Bpe13g00201 671 PANTHER ACETOLACTATE SYNTHASE 65 670 - -
Bpe13g00201 671 SUPERFAMILY DHS-like NAD/FAD-binding domain 287 454 IPR029035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00201 K01652 E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] - cpap:110820463 1087.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00924 Bpe-Chr10:14836414 Bpe13g00201 Bpe-Chr13:9993632 9.41E-14 dispersed
Bpe13g00201 Bpe-Chr13:9993632 Bpe14g00101 Bpe-Chr14:1482891 9.58E-43 dispersed
Bpe13g00201 Bpe-Chr13:9993632 Bpe02g01392 Bpe-Chr2:17467778 3.11E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g102 . Blo16g00269 . . . Bpe13g00201 Bma06g00260 . . . Cma10g00060 Cma11g00031 . . . . Cpe04g01617 Bhi02g00519 . . . Hepe09g0046 . . Cla06g01743 Cam06g1933 Cec06g1983 Cco06g1988 Clacu06g1889 Cmu06g1831 Cre06g2646 . . Cone13ag0223 . . . . . . . Bda11g01597 . . . . . . Cmo10g00054 Cmo11g00033 . . . . . Cpe18g00907 . . . . . . . . . . . . . . Lsi06g01643 . Chy02g02664 Cme02g02067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007549 1 1 1 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00201 Bpe_Chr13 FPKM 5.413793 6.028765 38.123737 36.460457 239.631958 227.932007 237.533188 17.842171 19.032 16.80134