Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00204 ATGGCTACCCCGACTACCAATGTTGGCGGCGGCGATGAGGATAGGGTTATGGCCGCTGCGCAGCAGATCTTGAAGAGTCTCAACGCTCCGAAGGAGGTTCGTGAAGACATGCTTTTGATCTTCTCGAATTTCGATAACCGTCTCTCGAATATTACTCAGTTGATAAATAGCGAGGATTTGAAGAACGAGGACCGCTGTGAGGCTGCCGAAAAGGTCATTTTTAGCTGGGAAGGGAGTTCTGATGCTTCTAGGAATTCTCTTCCATGGGAGGATTCGCCGGATGAGCTGGCATTTTATTTATCGGCTGTTGATGAAGTCCTTCAGTTGATTGAGGATCTTTCACATCGGTCTGATTCGTCCGAGATTGTAGCCCGGGCATCAAATACAATCCAGGTTGCCATGACAAGGCTTGAGGAAGAGTTTCGCCATATCTTAATCAGGAGCACAGTCCCCCTAGATGCCGAGCACCTCTATGGCTCAATCCGCAGGGTCTCTCTGTCTTTTGCATCCAACTATGGAGAAATTGACGAAGAGTTTGAGAGCTTTGGGGAGGTTGATCGTGATTCTGGACGGTTTCACGAAAGAGGTGCAAGTTTGGGGGATGACATATGGGTCGATTTGATACATCCCGATGCGGTAGTGGAGCTGAAAGAGATTGCAGACCGGATGGTTCGCGCTGGTTATGAAAGAGAGTGTGTTCAGGTGTATAGTACTGTCCGCCGGGAAGCTTTGGATGAATGTCTGATGATTCTTGGAATTGAGAAGCTGAGCATTGAGGAGATCCAGAAAATGAAATGGAAAACCTTGGACGAGAAGATGAAGAAATGGGGTCAGGCTATCAAAATTGTGGCTCGAGTGCTTTTCACGGGTGAAAAGAGACTTTGTGATCATATATTTGATGGGTCTGATGAGTCCAAGGATATTTGCTTCAATGAGATTGCAAAAGGGTGTGTGATGCAGTTGTTAAATTTTGGGGAGGCAGTGGCTATTGGGGAAAGGTCCCCAGAGAAGTTATTTCAAATTTTGAGTATGTATGATTCTTTGGCCAATGCTTTACCGGATTTGCAGGCAATGATTACTGATGAGTTTGTCCTGGGTGAGGCACGCCAAGTGCTATCTGGCTTGGCAGAGGCGTCCACAGGGACATTTGCAGTGTTCGAGAATGCTGTTCAGAATGAGACATCAAAGAAGCCCATGCTAAATGCTGAGATTCACCCTATAACGCGCTATGTAATGAATTATGTTAAATTGCTTGTGGATTACAGGGATACTATGGACTCACTTTTGCAAAGTGGGGAAGAGGAATTGAATCGCTTAAGGAACGAGATTAGCGATGATTTTGAGTTAGAATGTACATCACCTTTAGCTCATCGTTTGTTTTTGTTGATCTCATGTCTGGAGGCCAATCTTGAAGAGAAATCAAAATTATATGGAGATGGAGCAATACAATACGTCTTTCTTATGAACAATATTTTGTACATTGTTCAGAAAGTGAAAGATTCTGAACTTAGAAAGCTATTGGGTGATAACTGGGTTCGCAAACGGAGTGGCAAGGTCCGCCAGCTTGCAACCAGTTACCTTCGTTCTTCTTGGATCAAGATATTGTCTTATTTGAAAGATGGAGTTGGTGGGAGTTCGGGTAATGCCTTGAAGGGTTTTTTGAAAGAAAGATTTAAGAATTTCAATGCGGGATTTGAGGAAATCTATAGAATTCAGACGGGGTGGAAAGTACCTGATCCTCAACTTCGTGAAGAGCTACGACTCTCTGTGTCCGAGAAAGTGATTCCAGCATACCGCTCTTTCATTGGAAGGTTTGTGAATCCTCGAGAGAGTGGAAGACATGCTGAGAAGTATGTCAAATATACAGAAGAAGATATTGCAAACTATCTATTGGACTTGTTTGAAGGATCACCCAGTATTCTACACCACCTGCGAAGAAAAAGTACATAG 1950 44.1 MATPTTNVGGGDEDRVMAAAQQILKSLNAPKEVREDMLLIFSNFDNRLSNITQLINSEDLKNEDRCEAAEKVIFSWEGSSDASRNSLPWEDSPDELAFYLSAVDEVLQLIEDLSHRSDSSEIVARASNTIQVAMTRLEEEFRHILIRSTVPLDAEHLYGSIRRVSLSFASNYGEIDEEFESFGEVDRDSGRFHERGASLGDDIWVDLIHPDAVVELKEIADRMVRAGYERECVQVYSTVRREALDECLMILGIEKLSIEEIQKMKWKTLDEKMKKWGQAIKIVARVLFTGEKRLCDHIFDGSDESKDICFNEIAKGCVMQLLNFGEAVAIGERSPEKLFQILSMYDSLANALPDLQAMITDEFVLGEARQVLSGLAEASTGTFAVFENAVQNETSKKPMLNAEIHPITRYVMNYVKLLVDYRDTMDSLLQSGEEELNRLRNEISDDFELECTSPLAHRLFLLISCLEANLEEKSKLYGDGAIQYVFLMNNILYIVQKVKDSELRKLLGDNWVRKRSGKVRQLATSYLRSSWIKILSYLKDGVGGSSGNALKGFLKERFKNFNAGFEEIYRIQTGWKVPDPQLREELRLSVSEKVIPAYRSFIGRFVNPRESGRHAEKYVKYTEEDIANYLLDLFEGSPSILHHLRRKST 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10055728 10057677 + Bpe006326.1 Bpe13g00204 112984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00204 649 Coils Coil 422 442 - -
Bpe13g00204 649 Pfam Exo70 exocyst complex subunit 274 631 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bpe13g00204 649 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 50 648 - -
Bpe13g00204 649 SUPERFAMILY Cullin repeat-like 66 635 IPR016159 -
Bpe13g00204 649 PANTHER EXOCYST COMPLEX PROTEIN EXO70 50 648 IPR004140 GO:0000145|GO:0006887
Bpe13g00204 649 Gene3D Exocyst complex component Exo70 81 641 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00204 K07195 EXOC7, EXO70; exocyst complex component 7 - mnt:21411514 938.717
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00204 Bpe15g00216 CCT
Bpe12g00483 Bpe13g00204 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01432 Bpe-Chr2:17761111 Bpe13g00204 Bpe-Chr13:10055728 4.56E-137 dispersed
Bpe04g01931 Bpe-Chr4:24228268 Bpe13g00204 Bpe-Chr13:10055728 1.73E-114 dispersed
Bpe10g00709 Bpe-Chr10:13496707 Bpe13g00204 Bpe-Chr13:10055728 1.98E-151 dispersed
Bpe12g00483 Bpe-Chr12:10646726 Bpe13g00204 Bpe-Chr13:10055728 0 dispersed
Bpe13g00204 Bpe-Chr13:10055728 Bpe14g00148 Bpe-Chr14:1923934 4.68E-131 dispersed
Bpe01g00069 Bpe-Chr1:452792 Bpe13g00204 Bpe-Chr13:10055728 3.09E-129 transposed
Bpe13g00204 Bpe-Chr13:10055728 Bpe15g00216 Bpe-Chr15:13291361 0 wgd
Bpe13g00204 Bpe-Chr13:10055728 Bpe07g00886 Bpe-Chr7:14951140 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
Vvi17g659 . . . Bda15g00670 . Bpe13g00204 Bma06g00256 . Cmo13g01120 . . Cma11g00035 . . . Cpe20g00075 . . . . . . . . . . . . . . . . . . . Lsi02g00119 Csa01g00599 Chy12g01498 Cme12g01942 . . Bda11g01727 Bda14g00880 . . . . Sed08g2120 . . Cma13g01074 . Car13g00910 . . . Bhi08g01084 Tan05g2361 Cmetu12g0690 Lac10g0148 Hepe07g2463 . . Cla04g01154 Cam04g1212 Cec01g1723 Cco01g1768 Clacu04g1239 Cmu04g1218 Cre01g1514 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01931 . 10 648 EXO70 exocyst subunit family AT5G03540 75.2 1.6e-277 951.8
Bpe02g00708 . 1 639 EXO70 exocyst subunit family AT5G03540 71.9 8.5e-266 912.9
Bpe02g00708 . 1 639 EXO70 exocyst subunit family AT5G52340 78.5 4.2e-291 996.9
Bpe04g01931 . 12 648 EXO70 exocyst subunit family AT5G52340 73.0 7.8e-269 922.9
Bpe02g00708 . 145 632 EXO70 exocyst subunit family AT5G52350 62.6 5.9e-170 594.3
Bpe04g01931 . 147 650 EXO70 exocyst subunit family AT5G52350 58.3 1.5e-160 563.1
Bpe01g00069 . 1 630 EXO70 exocyst subunit family AT5G58430 65.3 1.6e-245 845.5
Bpe01g00069 . 1 629 EXO70 exocyst subunit family AT1G07000 50.7 1.8e-174 609.4
Bpe04g00872 . 63 644 EXO70 exocyst subunit family AT5G13150 50.2 5.2e-159 558.1
Bpe06g00808 BCT 8 607 EXO70 exocyst subunit family AT1G72470 61.6 2.2e-207 718.8
Bpe10g00709 BCT 1 581 EXO70 exocyst subunit family AT1G72470 64.0 2.2e-207 718.8
Bpe10g00709 BCT 1 579 EXO70 exocyst subunit family AT1G54090 62.5 4.1e-206 714.5
Bpe06g00808 BCT 9 605 EXO70 exocyst subunit family AT1G54090 59.7 1.6e-205 712.6
Bpe10g00709 BCT 1 580 EXO70 exocyst subunit family AT3G14090 63.9 7.1e-214 740.3
Bpe06g00808 BCT 2 606 EXO70 exocyst subunit family AT3G14090 60.3 6.2e-210 727.2
Bpe13g00204 BCT,CCT 13 648 EXO70 exocyst subunit family AT5G50380 60.4 4.5e-222 767.7
Bpe15g00216 CCT 13 652 EXO70 exocyst subunit family AT5G50380 61.2 8.6e-221 763.5
Bpe12g00483 BCT,CCT 13 649 EXO70 exocyst subunit family AT5G50380 57.6 1.6e-203 706.1
Bpe07g00886 . 13 639 EXO70 exocyst subunit family AT5G50380 56.4 3.2e-199 691.8
Bpe04g00025 . 15 683 EXO70 exocyst subunit family AT4G31540 70.3 3.9e-282 967.2
Bpe04g01857 . 40 611 EXO70 exocyst subunit family AT3G55150 51.9 5.8e-163 571.2
Bpe15g01092 . 30 620 EXO70 exocyst subunit family AT3G55150 51.3 1.9e-161 566.2
Bpe15g01092 . 10 620 EXO70 exocyst subunit family AT2G39380 51.4 4.8e-165 578.2
Bpe04g01857 . 33 611 EXO70 exocyst subunit family AT2G39380 52.5 6.9e-164 574.3
Bpe03g01053 . 37 604 EXO70 exocyst subunit family AT3G09530 50.9 1.3e-146 516.9
Bpe03g01053 . 1 613 EXO70 exocyst subunit family AT3G09520 55.0 3.1e-177 618.6
Bpe04g01604 . 1 607 EXO70 exocyst subunit family AT3G09520 52.7 4.4e-171 598.2
Bpe01g00153 CCT 11 608 EXO70 exocyst subunit family AT5G59730 53.6 9.8e-171 597.0
Bpe08g00122 BCT,CCT 4 578 EXO70 exocyst subunit family AT5G59730 50.6 2.3e-151 532.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00204 Bpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0