Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00212 ATGGCTAATGCTTTCAGCTTCTTCCTCAAAGATCAAGCAGTTGATCTTGATCCTGAACTTGGGTTCTCCAGTCTAGCCTGGCATCCTCCATTAACGGAGGACAGAGGTCCTAACTGCTTCAAAATCAGGTCTTTTGAACCCCCATATTGGGACGAAAATAGGGAAACAAAGAGATTGAAACGAACGATGAGCGTTGCGGAATCATCGAGCTTCGTGAATGAAGGAACGATTCTCAGTCGGAGTAGCAGCACCAGTAGCTTGAACAGTTTGGCCAGGCGGCAGATTGAAGATTGTCTGCTGAGTTTTAATCAGAGGGTTGAGGCTGTCCACGGTGTGAGTTTCAAATCTGAAGACGGCGGAGGTTCGTCGGTGGAAGACGATTGGGGCGAGGAGATGAGCCTCTTTCATCTCCTCATCGCCTGCGCCGAAGCTGTAGCCTGTAGAGACAAGTCGTACGCCTCCATGCTTTTGTCCGATCGTAGAGGCAAAGCTTTGGTGTTCGGATCTTCGTTTCAGCGGGTTGCTTCCTGTTTCGTCCGAGGCCTAGCAGATCGACTAGCGCATATTGAACAACTCGGGTCAATCGGGCGATTTTCCCCGACCATGAATATCAGGGATTTTGTATCAGAAAGCAAGGAGGAAGCTCTGGGTTTGGTGTATGAAATTTGCCCGCAAATTCAGTTTGGTCATTTTGTGGCCAATTCTGCAATATTGGAAGCCATTGAGGGAGAGAATTATATCCACATTGTGGACTTGGGGATGACCCTTGGTTTAGGACTGGGCCAGCAATGGCTCAGCCTCTTCAACAGCCTCGCTATGCGCTCTGACCAGCTGCCTTGCCATGTCCGAATCACTGGCATTGGCCTCGACATCGAAAGATTCCAAATAATTGGCCAGAATATCGAAGCTCACGCCGAAAGGTTGGGATTCGATCTGGAATTCTCGGCAGTCAAAAGCTCCTTGGAAAACCTGCGGATCGAAGACATAAAACTGGTGGAAAATGAAGTTTTGATCGTCAATAGCATTCTTCAACTGCATTGTGTAGTGAAAGAGAGCAGAGGGGCTTTAAATTCAGTCCTGAAATTGATCCATAAGCTTTCACCAAAGATCTTAACTTTGGTGGAGCAAGATTCCAATCATAATGGGCCATTTTTTCTTGGGAGATTCATGGAAGCTCTCCATTACTACTCTGCAATATTCGACTCGCTTGACGCAATGCTGCCGAAATACGACACTCGGAGAGCAAAAATAGAGCATTTTTACTTTGCAGAGGAGATAAGAAACATAGTGAGCTGCGAGGGGCCGGGGAGGGTCGAAAGGCACGAGAAGGCGGAGCAATGGCGGAGGAGGATGAGCAGGGCTGGGTTTCAGGCGGCGCCCATGAAGATGGCTGGTGAGGCCAAGAAATGGCTTGGGAACAATAAGGGTTTTGAAGGCCACACCATTGTTGAAGAGAAGGGGTGTTTGGTTCTTGGGTGGAAATCAAAGCCCATTGTTGCAGCTTCTTGCTGGAAATGCTAG 1521 48.39 MANAFSFFLKDQAVDLDPELGFSSLAWHPPLTEDRGPNCFKIRSFEPPYWDENRETKRLKRTMSVAESSSFVNEGTILSRSSSTSSLNSLARRQIEDCLLSFNQRVEAVHGVSFKSEDGGGSSVEDDWGEEMSLFHLLIACAEAVACRDKSYASMLLSDRRGKALVFGSSFQRVASCFVRGLADRLAHIEQLGSIGRFSPTMNIRDFVSESKEEALGLVYEICPQIQFGHFVANSAILEAIEGENYIHIVDLGMTLGLGLGQQWLSLFNSLAMRSDQLPCHVRITGIGLDIERFQIIGQNIEAHAERLGFDLEFSAVKSSLENLRIEDIKLVENEVLIVNSILQLHCVVKESRGALNSVLKLIHKLSPKILTLVEQDSNHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEHFYFAEEIRNIVSCEGPGRVERHEKAEQWRRRMSRAGFQAAPMKMAGEAKKWLGNNKGFEGHTIVEEKGCLVLGWKSKPIVAASCWKC 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10191820 10193737 + Bpe006334.1 Bpe13g00212 112992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00212 506 ProSiteProfiles GRAS family profile. 125 505 IPR005202 -
Bpe13g00212 506 PANTHER DELLA PROTEIN RGL1-LIKE 75 505 - -
Bpe13g00212 506 Pfam GRAS domain family 135 505 IPR005202 -
Bpe13g00212 506 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 75 505 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00212 - - - tcc:18605049 613.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00212 Bpe15g00201 CCT
Bpe13g00212 Bpe15g00201 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00212 Bpe-Chr13:10191820 Bpe02g01376 Bpe-Chr2:17352167 6.55E-70 dispersed
Bpe14g00607 Bpe-Chr14:5054223 Bpe13g00212 Bpe-Chr13:10191820 6.50E-94 transposed
Bpe13g00212 Bpe-Chr13:10191820 Bpe15g00201 Bpe-Chr15:13091025 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g917 . Blo16g00254 . . . Bpe13g00212 Bma06g00247 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0038 . . . . . . . . Bda11g01611 . . Bpe15g00201 Bma03g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006339 3 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22259 PF03514 GRAS 2.70E-106 CL0063 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00212 Bpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0