Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00218 ATGGAGTCTTCTGAAGTCGAGTATGTAATGAACCCCGGGGAAGATCCGGGGTTTGGGTTGAAGAAGTATCTTTATCGGAATCACGATCTTGGTCCTGCAATTTCCGATTCTAATCAAGACAGCGTTGTTTATTCGTGGCTTCAAAACTTGAGGCTGGAGGAGGATGAGGAGGGCGGAAAGGATTCCGGTGAAGGCGAAGAAGAAAATGTTGACAAAAAGACCGAAGAGAGTGGCAGAGATGGAGACAGCCAAAATGGGTGGCATTGGGCAGACGAGAATGAGAATTTAGGCGGCTTGGACGGCAAAGGCGGATGGGGGGAGATGGGGAAGACAGACGAGAGAAGCGAGAGTAGTTACCACTACCCACTGAGGCCTGATGCTGAAGATTGTGCGTTTTACCTGAAGACTGGAAGTTGTAAGTTTGGATCAATTTGCAAATTCAATCACCCTGTCAGGAGAACTTTCCAGTATTACTCGATGATGGGCGGCAGTAAGTTTGGAAGAGCCTGTAGATACAACCACATGAGACCTAAAGGATCCGACAACTCAGTAGTAGAGCTCAACATTGTGGGATTGCCAGTCCGACCAGATGAGAAAGAGTGTTCTTACTATATACGAACTGGGTCCTGCAAGTATGGAGCAAACTGCAAATTTAATCATCCCAATCCCCTGGCTTCCATTCGATCTACTAGTCTGAAGTCGGGAAATGATGGGTCACAATCACCACATGACTCTTTCGAATCAGCAAACACCTCCTGGTCTTCATCGAGGACAGGGACGGAAACTGTTCCATTTGTACCTGTGGCTCCGTTATATCCATCAGAAAGGAGAATGCTTCAACCTAAAGGTTATGTTGTGAACAACCCTGTGAGGAAAACCCATCTCCGTTGGTATCAGCACAAGCAGATGCAAATGGAAGAATTTCCCGTACGACCAGGTCAACCCGAATGCAACTACTTTGTAAGGACAGGTGATTGCAAGTTTAAACATACTTGCAAATATCATCATCCCAAAAATTTGAGCAAAATGTCAACCCGTTGCATATTCAATGACGAGGGCCTGCCTTTGAGACCTGATGAGAGCGTCTGTGTGTATTATAGTCTCTATGGCATCTGCAAATCCGGTCCGGCCTGTAAATTTGACCATCCAATAGGATTAGGATCTTGGAGCGGATACTAA 1179 46.14 MESSEVEYVMNPGEDPGFGLKKYLYRNHDLGPAISDSNQDSVVYSWLQNLRLEEDEEGGKDSGEGEEENVDKKTEESGRDGDSQNGWHWADENENLGGLDGKGGWGEMGKTDERSESSYHYPLRPDAEDCAFYLKTGSCKFGSICKFNHPVRRTFQYYSMMGGSKFGRACRYNHMRPKGSDNSVVELNIVGLPVRPDEKECSYYIRTGSCKYGANCKFNHPNPLASIRSTSLKSGNDGSQSPHDSFESANTSWSSSRTGTETVPFVPVAPLYPSERRMLQPKGYVVNNPVRKTHLRWYQHKQMQMEEFPVRPGQPECNYFVRTGDCKFKHTCKYHHPKNLSKMSTRCIFNDEGLPLRPDESVCVYYSLYGICKSGPACKFDHPIGLGSWSGY 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10219885 10223537 - Bpe006340.1 Bpe13g00218 112998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00218 392 PANTHER PROTEIN PHOSPHATASE RELATED 29 384 - -
Bpe13g00218 392 ProSiteProfiles Zinc finger C3H1-type profile. 195 223 IPR000571 GO:0046872
Bpe13g00218 392 Gene3D - 158 238 - -
Bpe13g00218 392 ProSiteProfiles Zinc finger C3H1-type profile. 124 152 IPR000571 GO:0046872
Bpe13g00218 392 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872
Bpe13g00218 392 SUPERFAMILY CCCH zinc finger 124 152 IPR036855 GO:0046872
Bpe13g00218 392 SUPERFAMILY CCCH zinc finger 195 222 IPR036855 GO:0046872
Bpe13g00218 392 ProSiteProfiles Zinc finger C3H1-type profile. 357 385 IPR000571 GO:0046872
Bpe13g00218 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 150 IPR000571 GO:0046872
Bpe13g00218 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 197 221 IPR000571 GO:0046872
Bpe13g00218 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 359 383 IPR000571 GO:0046872
Bpe13g00218 392 Gene3D - 104 157 - -
Bpe13g00218 392 MobiDBLite consensus disorder prediction 65 87 - -
Bpe13g00218 392 Gene3D - 298 385 - -
Bpe13g00218 392 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13-RELATED 29 384 - -
Bpe13g00218 392 MobiDBLite consensus disorder prediction 53 120 - -
Bpe13g00218 392 Pfam RNA-binding, Nab2-type zinc finger 317 337 - -
Bpe13g00218 392 MobiDBLite consensus disorder prediction 106 120 - -
Bpe13g00218 392 MobiDBLite consensus disorder prediction 228 259 - -
Bpe13g00218 392 SUPERFAMILY CCCH zinc finger 355 383 IPR036855 GO:0046872
Bpe13g00218 392 SMART c3hfinal6 197 222 IPR000571 GO:0046872
Bpe13g00218 392 SMART c3hfinal6 359 384 IPR000571 GO:0046872
Bpe13g00218 392 SMART c3hfinal6 124 151 IPR000571 GO:0046872
Bpe13g00218 392 SMART c3hfinal6 311 338 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00218 - - - cmo:103484086 345.125
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00218 Bpe15g00167 CCT
Bpe13g00218 Bpe15g00167 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00218 Bpe-Chr13:10219885 Bpe03g00449 Bpe-Chr3:23531545 5.73E-52 dispersed
Bpe13g00218 Bpe-Chr13:10219885 Bpe15g00665 Bpe-Chr15:17350157 3.75E-165 wgd
Bpe13g00218 Bpe-Chr13:10219885 Bpe07g00876 Bpe-Chr7:14869374 7.75E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22260 PF00642 zf-CCCH 5.00E-05 CL0537 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00218 Bpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0