Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00242 TTTAGGATCTTGGCTCCAACAACACATTTATTCTTTGCTTCAGCAATTCCAGTCATATCATTTGGGGAGCAGCTAGAGAGTAATACATATGGAACTTTGACGGCTGGCCAAATTCTAGCATCAACTGCACTTTGTGGCGTTATCCACTCGATTGTTGGTGGGCAGCCTCTGCTCATCCTTGGGATTGCTGAGCCGACGGTTCTAAAGTATACATTTATGTTCTGGATGCTAGAGTTTCAACTTTCTGTTAATGGATTGAATTTCTTGTGTTCCATAATCAGTAAGTTTACTCGTCTTGCCGGTGAATTATTTGGTCTCCTCATTCCAATGCTTTATTTAATGAGTATATTGATGGCAAGATTTAAATTTTTGATCAAATTTCGATTTAAAAAAAAAAAGAAATTTCAGGAGAAGTTGAATGTGTCTCCATTGTACATAATCGGAGCATTTATTCCGGCCACCATGATAGCGGTGCTTTATTACTTTGATCACGGTGTTGCATCTCAGCTTGCCCAGCAAAAAGAGTTCAATCTAAAGAGACCAGCCTCATGTCATTATGATCTTCTCCTCTTGGGTTTGGCTACCCTTAAGCACCAACTTCTGCGTACTAAAATGCTCTCAGTGGCTCGAAAAAGGATCAGGCAAAATACGAACTTAAGTCGATTATATCGTACGAGGCAAGAAGCGTACAATGAAATGCAGACTCCATTAGTATATCAAAATCCACCTGCTCTGGGTCTGAAAGAGTTGAAAGAATCCACCATCCAATCAGCCTCGAGTAATGGCTGTATGGATTCTCCTGTTTTTGATGTGGATAAGGATATAGATGATCATCTTCTTCCAGTTGAAGTTAAAGAGCAACGGCTTAGCAATTATCATCAGGCTTTAATGGTCGGTGGGTGTTTCATGGCAATCGAAAGCTTGCAGGGAAATCAGTTTTGGGAAAGAAATTTGTTGCTTTTCACTGCTTTAAGTAGACGATATAAGGTGCTGGAGAAATGCCATGCGAGTTTTGTCGAGACTGTGCCGATCAAAATGATTGCAGCCTTCACCTTGTTTCAGACAGCCTACTTGGTCGTTTGTTTTGGGGTGACATGGATTCCAATTGCCAGAGTTCTTTTTCTGCTCTTGATTATGCTTCTCGTCCCAATATTTTCAAAACAGGCGTATAGCTCTCGGATGAAGAAGCTTAGTGGGGAGGGAAGCCCTCGGTTGGGTGGAAAAAGATTTTCCGGGACAAAAACTACAAGTCCCGGAAGGACTTTGTTGAGAGAGAGTCTGCATGCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCGAATTTCATGGCACTCAAGAGGTCTTGTCCTAAGAATTGTTAA 1359 41.28 FRILAPTTHLFFASAIPVISFGEQLESNTYGTLTAGQILASTALCGVIHSIVGGQPLLILGIAEPTVLKYTFMFWMLEFQLSVNGLNFLCSIISKFTRLAGELFGLLIPMLYLMSILMARFKFLIKFRFKKKKKFQEKLNVSPLYIIGAFIPATMIAVLYYFDHGVASQLAQQKEFNLKRPASCHYDLLLLGLATLKHQLLRTKMLSVARKRIRQNTNLSRLYRTRQEAYNEMQTPLVYQNPPALGLKELKESTIQSASSNGCMDSPVFDVDKDIDDHLLPVEVKEQRLSNYHQALMVGGCFMAIESLQGNQFWERNLLLFTALSRRYKVLEKCHASFVETVPIKMIAAFTLFQTAYLVVCFGVTWIPIARVLFLLLIMLLVPIFSKQAYSSRMKKLSGEGSPRLGGKRFSGTKTTSPGRTLLRESLHASSSSSSSSSSNFMALKRSCPKNC 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10398757 10401547 + Bpe006364.1 Bpe13g00242 113022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00242 452 Pfam HCO3- transporter family 3 74 IPR011531 GO:0006820|GO:0016021
Bpe13g00242 452 PANTHER ANION EXCHANGE PROTEIN 136 192 IPR003020 GO:0005452|GO:0006820|GO:0016020
Bpe13g00242 452 PANTHER ANION EXCHANGE PROTEIN 1 120 IPR003020 GO:0005452|GO:0006820|GO:0016020
Bpe13g00242 452 MobiDBLite consensus disorder prediction 396 419 - -
Bpe13g00242 452 PANTHER BORON TRANSPORTER 2-RELATED 1 120 - -
Bpe13g00242 452 PANTHER BORON TRANSPORTER 2-RELATED 193 384 - -
Bpe13g00242 452 PANTHER ANION EXCHANGE PROTEIN 193 384 IPR003020 GO:0005452|GO:0006820|GO:0016020
Bpe13g00242 452 PANTHER BORON TRANSPORTER 2-RELATED 136 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00242 K24194 BOR; boron transporter - cpap:110812585 364.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00242 Bpe-Chr13:10398757 Bpe14g00572 Bpe-Chr14:4863103 1.42E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g758 Blo04g00732 . . . . Bpe13g00242 Bma06g00218 . Cmo13g00915 . . . . . . Cpe20g00245 . . . . . . . . . . . . . . . Cone2ag0909 Cone16ag0099 . . Lsi02g00374 Csa01g00855 Chy12g01265 Cme12g01692 . . Bda11g01655 Bda14g00809 . . Bma03g00779 . Sed08g2514 . . Cma13g00886 . Car13g00726 . . . Bhi08g01614 Tan05g2005 . . Hepe07g2224 . . Cla01g01302 Cam01g1428 Cec01g1461 Cco01g1462 Clacu01g1368 Cmu01g1274 Cre01g1263 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0035469 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00242 Bpe_Chr13 FPKM 129.789871 134.835983 2.30885 1.956384 11.802481 12.140399 10.51115 0.0 0.0 0.0