Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00248 ATGAAGGAAACTCTACGATACTTAGCAGGAATTGCAGGCGAGAGTGGATATGGCTCGAAGACTACAGCTGACGAAGTTAAACAGGATTCTTCTTCCTCGTCTTCTTCTCATCTAACTGCTGTTATCACTGGGCCAACTTCAGGAATCGGAGCTGAAACAGTAAGAGTACTCGCCAAGAGAGGAGTGAGAATTGTAATGGCAGCTAGAGATTTGAAGAAGGCAGCTGAAACGAAGAAGAAAATTCAGAGAGAAACTCCAGAGGCTGAAATTATCGTGCTTGAAACTGATCTCAGCTCATTTGCATCAGTGACGAGGTTTTGTTCTTCATTTTTATCACTCGGCCTACCCCTCAACATTCTGATCAACAACGCCGGCATGTTTTCTAAAACTTTGGAGTACTCCGAAGACAAGATCGAGATGACGTTTGCTACAAATTATTTGGGCCACTTTCTGCTGACGGAATTGTTGGTAGAGAAGATGGTAGAAACAGCAGCAAAAACAGGAATCCAGGGGAGAATAATCAACGTCTCCTCTGTTATTCACTCCTGGGTTAAGAAGGGAAATGGCTTCTGCTTCAACCAAATGCTGAATACAAACAAAATTAAATGCAGGTACAACGGCACGAAAGCTTATGCTCAGTCAAAGTTGGCTAATATTTTGCATGCAAAGGAAATGGCAAGGCAACTCAAGGCAAGAAATGCAAGAGTAACTATCAATGCAATTCACCCAGGGATTGTAAGAACTGCTATAATCAGAGCCCATAAAAGCTTTATCACAGGCATGAACTTCTTCTATTTTGGTGCATCAACTACATGCTATCTTGCTCTAAGCGCACAAGTAGAAGGAACAAGCGGAAAATACTTTGCAGATTGTAATGAATCTAACTGCTCACCTCTTGCAAATGATGAATCTGAAGCACGAAAACTATGGATGCAAACTCACACTTTAATTAGAAGGCGACTGTCCAATCTGTCTGCCTAA 981 41.9 MKETLRYLAGIAGESGYGSKTTADEVKQDSSSSSSSHLTAVITGPTSGIGAETVRVLAKRGVRIVMAARDLKKAAETKKKIQRETPEAEIIVLETDLSSFASVTRFCSSFLSLGLPLNILINNAGMFSKTLEYSEDKIEMTFATNYLGHFLLTELLVEKMVETAAKTGIQGRIINVSSVIHSWVKKGNGFCFNQMLNTNKIKCRYNGTKAYAQSKLANILHAKEMARQLKARNARVTINAIHPGIVRTAIIRAHKSFITGMNFFYFGASTTCYLALSAQVEGTSGKYFADCNESNCSPLANDESEARKLWMQTHTLIRRRLSNLSA 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10435638 10437891 - Bpe006368.1 Bpe13g00248 113028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00248 326 Gene3D - 26 322 - -
Bpe13g00248 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Bpe13g00248 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Bpe13g00248 326 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Bpe13g00248 326 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Bpe13g00248 326 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Bpe13g00248 326 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Bpe13g00248 326 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Bpe13g00248 326 PRINTS Glucose/ribitol dehydrogenase family signature 234 251 IPR002347 -
Bpe13g00248 326 Coils Coil 64 84 - -
Bpe13g00248 326 CDD retinol-DH_like_SDR_c_like 39 310 - -
Bpe13g00248 326 MobiDBLite consensus disorder prediction 21 39 - -
Bpe13g00248 326 MobiDBLite consensus disorder prediction 18 39 - -
Bpe13g00248 326 PANTHER RETINOL DEHYDROGENASE 4 321 - -
Bpe13g00248 326 Pfam short chain dehydrogenase 39 180 IPR002347 -
Bpe13g00248 326 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 4 321 - -
Bpe13g00248 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 294 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00248 - - - zju:107418424 480.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00248 Bpe15g00646 CCT
Bpe12g00629 Bpe13g00248 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00500 Bpe-Chr5:19198655 Bpe13g00248 Bpe-Chr13:10435638 4.43E-111 dispersed
Bpe07g00255 Bpe-Chr7:1836778 Bpe13g00248 Bpe-Chr13:10435638 8.21E-111 dispersed
Bpe07g01065 Bpe-Chr7:16075119 Bpe13g00248 Bpe-Chr13:10435638 1.44E-28 dispersed
Bpe12g00629 Bpe-Chr12:11943958 Bpe13g00248 Bpe-Chr13:10435638 2.54E-30 dispersed
Bpe03g00141 Bpe-Chr3:1923731 Bpe13g00248 Bpe-Chr13:10435638 7.67E-90 transposed
Bpe04g01609 Bpe-Chr4:22267403 Bpe13g00248 Bpe-Chr13:10435638 2.43E-71 transposed
Bpe05g00662 Bpe-Chr5:20351107 Bpe13g00248 Bpe-Chr13:10435638 5.05E-82 transposed
Bpe13g00248 Bpe-Chr13:10435638 Bpe15g00646 Bpe-Chr15:17239675 8.27E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g794 Blo04g00726 . . . Bpe12g00629 Bpe13g00248 Bma06g00212 . Cmo13g00903 . Cma10g00111 . Car10g00100 . . Cpe20g00254 . . . . . . . . Cla06g01682 Cam06g1869 Cec06g1918 Cco06g1923 Clacu06g1824 Cmu06g1767 Cre06g2583 Cone2ag0923 Cone16ag0084 Cone13ag0157 Cone19ag0156 Lsi02g00396 . . . Blo13g00099 . Bda11g01661 Bda14g00802 . Bpe15g00646 Bma03g00776 . . Cmo10g00115 . Cma13g00871 . Car13g00713 . . Cpe18g00854 Bhi08g01646 . . Lac10g0476 . . . Cla01g01319 Cam01g1411 Cec01g1442 Cco01g1481 Clacu01g1384 Cmu01g1293 Cre01g1248 Lsi06g01573 Csa01g00128 Chy02g02599 Cme02g01995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002718 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 4 2 2 1 1 2 2 2 2 2 3 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00248 Bpe_Chr13 FPKM 43.316563 46.340706 15.729732 15.592956 14.296453 16.20977 13.240437 4.597146 4.525465 4.13247