Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00261 ATGGGTAGCTATGGCCAACCCAAATGGAGCATCTCAGTTCAGCATCATCGATCTCCTTCCAACCCAAAGCATGATGAACAGGAGACCCCCCGAGATTTCATCTGCCCGATTTCTGGATCTTTAATGGCGGATCCAGTTGTCGTCTCTTCGGGTCATTCTTTCGAGCGACTCTCCGTTCAAGTTTGCAGAGAATTTCGCTTCTCTCCCAAGCTTGAAGATGGCTCGAGAGCTGATTTCTCCACTGTTTTCGATAACAGAACCATGAAATCAACGATACTGAAGTGGTGCGATAGATCTGACATGGCGTATCCGCATCCACCGGATCGAAGCTCCGTCGAAAGAATCGTCCGTTCGTTAATGGAGGAGGAGAGACTAAAGCCGTACATGAGGGATTCATCGCTCTTGAGAAACATGCCCGAAAAACCGGAGTTGAAGCAGGTTTACGCAGACACTGTGTTAGCGCCTCGAGTTTACCAGCTTTACGGAGAATCGCCTGCCGGATGTTCTAGTCCGAGCTCTTCCCTACCGTTCACAACTCGACCGTCTTGTTACTCGTCTTCAACCTCGTCGGCTGAATTCCTTTCAAATGAAAATGGAGAACAACTACTCCTTAAGCTCGAGAGCTCCGATTTGTTCGATCAAGAAGAAGGCGCCGATTCACTGAGAAGGGTGACGAGGTCCAACGAGGAAGCTAGAATTACTCTCTGCACTTCTCCATTGCTTTCAGCTCTCAAAACCCTAGTAACGTCGACATTTCCCAGAGTACAAATCAACGCCATAGCCTCGCTGGTTAATCTGTCTCTGCAAAACCCAAACAAGGTGAAGATTGTGAGATCTGGATTTATTCCAGTTCTGATCGAGATCTTGAGAGAAAACGCCGACGAGGCAGTTGAGCACGCGGTCGGAGCGCTTTTCAGTCTAGCTTTGGAGGACGAGAACAGAACGGCGATCGCGTCTCTCGGCGCTCTGCCATATCTGATGCAGGCGCTCCGATCGGAAAGAGAGCAGACTCGGAATGACTCTGCGCTCTGCTTGTACAATCTGACGCTCGTCAAGAGCAACCGAGTCAAACTCGTGAAACTCGGCGCCGTTCCGACTCTGCTATCAATGGTAAAATCTGGAAACTCGACGAACAGAGCTCTGCTGATTCTATGTAACCTAGCAATTTGTCCTGAAGGAATATCGGCGCTGCTCGACGCTAATGCAGTCAGTTCGTTGGTGAGGATGCTTAGGGAGAACGAGTTGGATACCGAGTTAACTCGAGAATATTGCGTTTCAGTGCTGTACGGACTCAGCCATGGCGGACTGAGATTCAAGGGGCTAGCAAGGGAGGCGAGGGCGGCGGAGGTTTTGAGAGCTGTGGAAGATAGGGGAACGGAGAGAGCGAGAGAGAAAGCAAGGAAAATACTGCACAAAATGAGGGGAATAGAGGAAGACGACGACGGAGCAGGCAGAGAGCCGCTGGTCGACTCGGGAGGTCTGAGTTGGACCAAGAACCGAGTTGGGGGGATGCCAAGGGATCTCTACCAACACAACACAACAAACTTTTAA 1551 50.35 MGSYGQPKWSISVQHHRSPSNPKHDEQETPRDFICPISGSLMADPVVVSSGHSFERLSVQVCREFRFSPKLEDGSRADFSTVFDNRTMKSTILKWCDRSDMAYPHPPDRSSVERIVRSLMEEERLKPYMRDSSLLRNMPEKPELKQVYADTVLAPRVYQLYGESPAGCSSPSSSLPFTTRPSCYSSSTSSAEFLSNENGEQLLLKLESSDLFDQEEGADSLRRVTRSNEEARITLCTSPLLSALKTLVTSTFPRVQINAIASLVNLSLQNPNKVKIVRSGFIPVLIEILRENADEAVEHAVGALFSLALEDENRTAIASLGALPYLMQALRSEREQTRNDSALCLYNLTLVKSNRVKLVKLGAVPTLLSMVKSGNSTNRALLILCNLAICPEGISALLDANAVSSLVRMLRENELDTELTREYCVSVLYGLSHGGLRFKGLAREARAAEVLRAVEDRGTERAREKARKILHKMRGIEEDDDGAGREPLVDSGGLSWTKNRVGGMPRDLYQHNTTNF 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10558950 10560500 - Bpe006384.1 Bpe13g00261 113041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00261 516 SMART arm_5 228 268 IPR000225 GO:0005515
Bpe13g00261 516 SMART arm_5 390 433 IPR000225 GO:0005515
Bpe13g00261 516 SMART arm_5 269 309 IPR000225 GO:0005515
Bpe13g00261 516 SMART arm_5 351 389 IPR000225 GO:0005515
Bpe13g00261 516 SMART arm_5 310 350 IPR000225 GO:0005515
Bpe13g00261 516 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 506 - -
Bpe13g00261 516 PANTHER U BOX DOMAIN-CONTAINING 1 506 - -
Bpe13g00261 516 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Bpe13g00261 516 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Bpe13g00261 516 SUPERFAMILY ARM repeat 200 434 IPR016024 -
Bpe13g00261 516 CDD RING-Ubox 34 63 - -
Bpe13g00261 516 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 280 322 IPR000225 GO:0005515
Bpe13g00261 516 SUPERFAMILY RING/U-box 16 106 - -
Bpe13g00261 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 103 IPR013083 -
Bpe13g00261 516 MobiDBLite consensus disorder prediction 1 32 - -
Bpe13g00261 516 Gene3D - 196 475 IPR011989 -
Bpe13g00261 516 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
Bpe13g00261 516 MobiDBLite consensus disorder prediction 1 17 - -
Bpe13g00261 516 Pfam Armadillo/beta-catenin-like repeat 311 349 IPR000225 GO:0005515
Bpe13g00261 516 Pfam U-box domain 30 97 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00261 - - - zju:107407140 520.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01559 Bpe-Chr11:11600713 Bpe13g00261 Bpe-Chr13:10558950 1.90E-133 dispersed
Bpe13g00261 Bpe-Chr13:10558950 Bpe11g01609 Bpe-Chr11:12206034 2.77E-35 dispersed
Bpe14g00905 Bpe-Chr14:6745772 Bpe13g00261 Bpe-Chr13:10558950 1.96E-08 dispersed
Bpe13g00261 Bpe-Chr13:10558950 Bpe11g00764 Bpe-Chr11:5755923 1.03E-17 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00159 . 1 1046 U-box Gene Family AT5G15400 73.3 0.0e+00 1511.9
Bpe06g00419 . 1 781 U-box Gene Family AT3G54790 52.5 2.2e-129 459.9
Bpe06g00004 BCT 195 823 U-box Gene Family AT2G23140 61.5 1.6e-104 377.1
Bpe15g00315 BCT 192 739 U-box Gene Family AT2G23140 52.3 3.0e-66 250.0
Bpe13g01504 . 1 756 U-box Gene Family AT1G24330 58.0 1.5e-237 819.3
Bpe10g00785 . 1 769 U-box Gene Family AT1G24330 54.5 8.7e-214 740.3
Bpe13g01504 . 1 758 U-box Gene Family AT1G67530 57.1 1.2e-231 799.7
Bpe10g00785 . 1 768 U-box Gene Family AT1G67530 54.1 1.8e-206 716.1
Bpe01g00378 . 1 365 U-box Gene Family AT4G21350 59.5 3.7e-117 418.3
Bpe02g01924 . 1 360 U-box Gene Family AT4G21350 61.3 5.9e-115 411.0
Bpe09g00300 . 134 457 U-box Gene Family AT3G07360 52.6 1.6e-84 309.7
Bpe06g00548 . 134 457 U-box Gene Family AT3G07360 61.2 5.2e-83 304.7
Bpe10g00477 . 134 457 U-box Gene Family AT3G07360 54.9 5.5e-77 284.6
Bpe11g01609 CCT 240 464 U-box Gene Family AT1G71020 55.8 5.7e-62 235.3
Bpe11g00764 CCT 254 421 U-box Gene Family AT1G71020 56.6 7.5e-46 181.8
Bpe08g01367 CCT 227 419 U-box Gene Family AT1G71020 50.5 8.3e-45 178.3
Bpe11g01609 CCT 1 668 U-box Gene Family AT1G23030 54.4 4.8e-106 382.1
Bpe11g00764 CCT 89 632 U-box Gene Family AT2G28830 58.3 8.1e-103 371.3
Bpe08g01367 CCT 89 629 U-box Gene Family AT2G28830 57.2 7.1e-99 358.2
Bpe11g00764 CCT 1 630 U-box Gene Family AT3G46510 68.1 4.9e-157 551.6
Bpe08g01367 CCT 1 629 U-box Gene Family AT3G46510 64.2 2.0e-142 503.1
Bpe11g00764 CCT 8 621 U-box Gene Family AT3G54850 54.5 4.6e-104 375.6
Bpe02g01755 . 34 643 U-box Gene Family AT5G42340 66.1 1.9e-140 496.5
Bpe11g01122 . 1 714 U-box Gene Family AT1G29340 64.4 2.6e-228 788.5
Bpe04g01488 . 1 393 U-box Gene Family AT3G52450 56.7 6.0e-127 451.1
Bpe03g01192 . 1 393 U-box Gene Family AT3G52450 53.4 1.6e-119 426.4
Bpe04g01488 . 1 392 U-box Gene Family AT2G35930 55.8 5.0e-123 438.0
Bpe03g01192 . 1 392 U-box Gene Family AT2G35930 53.5 3.3e-119 425.2
Bpe06g00274 . 1 396 U-box Gene Family AT5G64660 50.6 1.1e-104 377.1
Bpe15g00290 . 1 448 U-box Gene Family AT3G49810 71.7 1.1e-179 626.3
Bpe13g00136 . 1 450 U-box Gene Family AT3G49810 70.1 1.9e-176 615.5
Bpe05g00017 . 1 450 U-box Gene Family AT3G49810 61.1 4.0e-150 528.1
Bpe15g00290 . 1 448 U-box Gene Family AT5G65920 67.8 3.5e-167 584.7
Bpe13g00136 . 1 450 U-box Gene Family AT5G65920 66.5 3.1e-163 571.6
Bpe05g00017 . 1 450 U-box Gene Family AT5G65920 61.6 1.5e-149 526.2
Bpe13g00949 . 30 876 U-box Gene Family AT2G45910 52.8 1.3e-234 809.7
Bpe02g01207 . 466 748 U-box Gene Family AT2G45910 50.2 4.6e-75 279.6
Bpe13g00261 . 28 503 U-box Gene Family AT5G40140 50.3 1.6e-60 230.7
Bpe13g01362 . 310 907 U-box Gene Family AT1G68940 54.2 5.5e-174 608.6
Bpe02g01758 CCT 4 813 U-box Gene Family AT1G76390 63.3 2.2e-276 948.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G76390 60.4 1.9e-267 918.7
Bpe02g01758 CCT 7 813 U-box Gene Family AT1G20780 64.1 1.7e-284 975.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G20780 60.2 1.3e-268 922.5
Bpe13g01504 . 1 758 U-box Gene Family AT1G27910 59.5 4.1e-248 854.4
Bpe10g00785 . 1 771 U-box Gene Family AT1G27910 57.5 1.8e-235 812.4
Bpe10g00007 . 1 598 U-box Gene Family AT5G67530 75.0 1.8e-262 901.7
Bpe13g00911 . 16 164 U-box Gene Family AT5G67530 52.9 1.1e-43 174.9
Bpe13g00538 CCT 1 523 U-box Gene Family AT1G04510 73.3 3.7e-224 774.2
Bpe14g01276 CCT 2 521 U-box Gene Family AT1G04510 72.4 4.5e-222 767.3
Bpe13g00538 CCT 1 487 U-box Gene Family AT2G33340 73.1 9.7e-211 729.6
Bpe14g01276 CCT 2 485 U-box Gene Family AT2G33340 72.7 4.5e-208 720.7
Bpe03g00897 . 10 279 U-box Gene Family AT3G07370 66.3 9.2e-105 376.7
Bpe09g00301 . 7 277 U-box Gene Family AT3G07370 59.8 2.3e-92 335.5
Bpe14g00159 . 1 1046 U-box Gene Family AT5G15400 73.3 0.0e+00 1511.9
Bpe06g00419 . 1 781 U-box Gene Family AT3G54790 52.5 2.2e-129 459.9
Bpe06g00004 BCT 195 823 U-box Gene Family AT2G23140 61.5 1.6e-104 377.1
Bpe15g00315 BCT 192 739 U-box Gene Family AT2G23140 52.3 3.0e-66 250.0
Bpe13g01504 . 1 756 U-box Gene Family AT1G24330 58.0 1.5e-237 819.3
Bpe10g00785 . 1 769 U-box Gene Family AT1G24330 54.5 8.7e-214 740.3
Bpe13g01504 . 1 758 U-box Gene Family AT1G67530 57.1 1.2e-231 799.7
Bpe10g00785 . 1 768 U-box Gene Family AT1G67530 54.1 1.8e-206 716.1
Bpe01g00378 . 1 365 U-box Gene Family AT4G21350 59.5 3.7e-117 418.3
Bpe02g01924 . 1 360 U-box Gene Family AT4G21350 61.3 5.9e-115 411.0
Bpe09g00300 . 134 457 U-box Gene Family AT3G07360 52.6 1.6e-84 309.7
Bpe06g00548 . 134 457 U-box Gene Family AT3G07360 61.2 5.2e-83 304.7
Bpe10g00477 . 134 457 U-box Gene Family AT3G07360 54.9 5.5e-77 284.6
Bpe11g01609 CCT 240 464 U-box Gene Family AT1G71020 55.8 5.7e-62 235.3
Bpe11g00764 CCT 254 421 U-box Gene Family AT1G71020 56.6 7.5e-46 181.8
Bpe08g01367 CCT 227 419 U-box Gene Family AT1G71020 50.5 8.3e-45 178.3
Bpe11g01609 CCT 1 668 U-box Gene Family AT1G23030 54.4 4.8e-106 382.1
Bpe11g00764 CCT 89 632 U-box Gene Family AT2G28830 58.3 8.1e-103 371.3
Bpe08g01367 CCT 89 629 U-box Gene Family AT2G28830 57.2 7.1e-99 358.2
Bpe11g00764 CCT 1 630 U-box Gene Family AT3G46510 68.1 4.9e-157 551.6
Bpe08g01367 CCT 1 629 U-box Gene Family AT3G46510 64.2 2.0e-142 503.1
Bpe11g00764 CCT 8 621 U-box Gene Family AT3G54850 54.5 4.6e-104 375.6
Bpe02g01755 . 34 643 U-box Gene Family AT5G42340 66.1 1.9e-140 496.5
Bpe11g01122 . 1 714 U-box Gene Family AT1G29340 64.4 2.6e-228 788.5
Bpe04g01488 . 1 393 U-box Gene Family AT3G52450 56.7 6.0e-127 451.1
Bpe03g01192 . 1 393 U-box Gene Family AT3G52450 53.4 1.6e-119 426.4
Bpe04g01488 . 1 392 U-box Gene Family AT2G35930 55.8 5.0e-123 438.0
Bpe03g01192 . 1 392 U-box Gene Family AT2G35930 53.5 3.3e-119 425.2
Bpe06g00274 . 1 396 U-box Gene Family AT5G64660 50.6 1.1e-104 377.1
Bpe15g00290 . 1 448 U-box Gene Family AT3G49810 71.7 1.1e-179 626.3
Bpe13g00136 . 1 450 U-box Gene Family AT3G49810 70.1 1.9e-176 615.5
Bpe05g00017 . 1 450 U-box Gene Family AT3G49810 61.1 4.0e-150 528.1
Bpe15g00290 . 1 448 U-box Gene Family AT5G65920 67.8 3.5e-167 584.7
Bpe13g00136 . 1 450 U-box Gene Family AT5G65920 66.5 3.1e-163 571.6
Bpe05g00017 . 1 450 U-box Gene Family AT5G65920 61.6 1.5e-149 526.2
Bpe13g00949 . 30 876 U-box Gene Family AT2G45910 52.8 1.3e-234 809.7
Bpe02g01207 . 466 748 U-box Gene Family AT2G45910 50.2 4.6e-75 279.6
Bpe13g00261 . 28 503 U-box Gene Family AT5G40140 50.3 1.6e-60 230.7
Bpe13g01362 . 310 907 U-box Gene Family AT1G68940 54.2 5.5e-174 608.6
Bpe02g01758 CCT 4 813 U-box Gene Family AT1G76390 63.3 2.2e-276 948.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G76390 60.4 1.9e-267 918.7
Bpe02g01758 CCT 7 813 U-box Gene Family AT1G20780 64.1 1.7e-284 975.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G20780 60.2 1.3e-268 922.5
Bpe13g01504 . 1 758 U-box Gene Family AT1G27910 59.5 4.1e-248 854.4
Bpe10g00785 . 1 771 U-box Gene Family AT1G27910 57.5 1.8e-235 812.4
Bpe10g00007 . 1 598 U-box Gene Family AT5G67530 75.0 1.8e-262 901.7
Bpe13g00911 . 16 164 U-box Gene Family AT5G67530 52.9 1.1e-43 174.9
Bpe13g00538 CCT 1 523 U-box Gene Family AT1G04510 73.3 3.7e-224 774.2
Bpe14g01276 CCT 2 521 U-box Gene Family AT1G04510 72.4 4.5e-222 767.3
Bpe13g00538 CCT 1 487 U-box Gene Family AT2G33340 73.1 9.7e-211 729.6
Bpe14g01276 CCT 2 485 U-box Gene Family AT2G33340 72.7 4.5e-208 720.7
Bpe03g00897 . 10 279 U-box Gene Family AT3G07370 66.3 9.2e-105 376.7
Bpe09g00301 . 7 277 U-box Gene Family AT3G07370 59.8 2.3e-92 335.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008896 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00261 Bpe_Chr13 FPKM 4.385356 3.042855 3.503306 2.224299 6.350974 5.494893 6.955757 1.468673 1.502269 1.248495