Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00261 ATGGGTAGCTATGGCCAACCCAAATGGAGCATCTCAGTTCAGCATCATCGATCTCCTTCCAACCCAAAGCATGATGAACAGGAGACCCCCCGAGATTTCATCTGCCCGATTTCTGGATCTTTAATGGCGGATCCAGTTGTCGTCTCTTCGGGTCATTCTTTCGAGCGACTCTCCGTTCAAGTTTGCAGAGAATTTCGCTTCTCTCCCAAGCTTGAAGATGGCTCGAGAGCTGATTTCTCCACTGTTTTCGATAACAGAACCATGAAATCAACGATACTGAAGTGGTGCGATAGATCTGACATGGCGTATCCGCATCCACCGGATCGAAGCTCCGTCGAAAGAATCGTCCGTTCGTTAATGGAGGAGGAGAGACTAAAGCCGTACATGAGGGATTCATCGCTCTTGAGAAACATGCCCGAAAAACCGGAGTTGAAGCAGGTTTACGCAGACACTGTGTTAGCGCCTCGAGTTTACCAGCTTTACGGAGAATCGCCTGCCGGATGTTCTAGTCCGAGCTCTTCCCTACCGTTCACAACTCGACCGTCTTGTTACTCGTCTTCAACCTCGTCGGCTGAATTCCTTTCAAATGAAAATGGAGAACAACTACTCCTTAAGCTCGAGAGCTCCGATTTGTTCGATCAAGAAGAAGGCGCCGATTCACTGAGAAGGGTGACGAGGTCCAACGAGGAAGCTAGAATTACTCTCTGCACTTCTCCATTGCTTTCAGCTCTCAAAACCCTAGTAACGTCGACATTTCCCAGAGTACAAATCAACGCCATAGCCTCGCTGGTTAATCTGTCTCTGCAAAACCCAAACAAGGTGAAGATTGTGAGATCTGGATTTATTCCAGTTCTGATCGAGATCTTGAGAGAAAACGCCGACGAGGCAGTTGAGCACGCGGTCGGAGCGCTTTTCAGTCTAGCTTTGGAGGACGAGAACAGAACGGCGATCGCGTCTCTCGGCGCTCTGCCATATCTGATGCAGGCGCTCCGATCGGAAAGAGAGCAGACTCGGAATGACTCTGCGCTCTGCTTGTACAATCTGACGCTCGTCAAGAGCAACCGAGTCAAACTCGTGAAACTCGGCGCCGTTCCGACTCTGCTATCAATGGTAAAATCTGGAAACTCGACGAACAGAGCTCTGCTGATTCTATGTAACCTAGCAATTTGTCCTGAAGGAATATCGGCGCTGCTCGACGCTAATGCAGTCAGTTCGTTGGTGAGGATGCTTAGGGAGAACGAGTTGGATACCGAGTTAACTCGAGAATATTGCGTTTCAGTGCTGTACGGACTCAGCCATGGCGGACTGAGATTCAAGGGGCTAGCAAGGGAGGCGAGGGCGGCGGAGGTTTTGAGAGCTGTGGAAGATAGGGGAACGGAGAGAGCGAGAGAGAAAGCAAGGAAAATACTGCACAAAATGAGGGGAATAGAGGAAGACGACGACGGAGCAGGCAGAGAGCCGCTGGTCGACTCGGGAGGTCTGAGTTGGACCAAGAACCGAGTTGGGGGGATGCCAAGGGATCTCTACCAACACAACACAACAAACTTTTAA 1551 50.35 MGSYGQPKWSISVQHHRSPSNPKHDEQETPRDFICPISGSLMADPVVVSSGHSFERLSVQVCREFRFSPKLEDGSRADFSTVFDNRTMKSTILKWCDRSDMAYPHPPDRSSVERIVRSLMEEERLKPYMRDSSLLRNMPEKPELKQVYADTVLAPRVYQLYGESPAGCSSPSSSLPFTTRPSCYSSSTSSAEFLSNENGEQLLLKLESSDLFDQEEGADSLRRVTRSNEEARITLCTSPLLSALKTLVTSTFPRVQINAIASLVNLSLQNPNKVKIVRSGFIPVLIEILRENADEAVEHAVGALFSLALEDENRTAIASLGALPYLMQALRSEREQTRNDSALCLYNLTLVKSNRVKLVKLGAVPTLLSMVKSGNSTNRALLILCNLAICPEGISALLDANAVSSLVRMLRENELDTELTREYCVSVLYGLSHGGLRFKGLAREARAAEVLRAVEDRGTERAREKARKILHKMRGIEEDDDGAGREPLVDSGGLSWTKNRVGGMPRDLYQHNTTNF 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10558950 10560500 - Bpe006384.1 Bpe13g00261 113041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00261 516 SMART arm_5 228 268 IPR000225 GO:0005515
Bpe13g00261 516 SMART arm_5 390 433 IPR000225 GO:0005515
Bpe13g00261 516 SMART arm_5 269 309 IPR000225 GO:0005515
Bpe13g00261 516 SMART arm_5 351 389 IPR000225 GO:0005515
Bpe13g00261 516 SMART arm_5 310 350 IPR000225 GO:0005515
Bpe13g00261 516 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 506 - -
Bpe13g00261 516 PANTHER U BOX DOMAIN-CONTAINING 1 506 - -
Bpe13g00261 516 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Bpe13g00261 516 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Bpe13g00261 516 SUPERFAMILY ARM repeat 200 434 IPR016024 -
Bpe13g00261 516 CDD RING-Ubox 34 63 - -
Bpe13g00261 516 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 280 322 IPR000225 GO:0005515
Bpe13g00261 516 SUPERFAMILY RING/U-box 16 106 - -
Bpe13g00261 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 103 IPR013083 -
Bpe13g00261 516 MobiDBLite consensus disorder prediction 1 32 - -
Bpe13g00261 516 Gene3D - 196 475 IPR011989 -
Bpe13g00261 516 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
Bpe13g00261 516 MobiDBLite consensus disorder prediction 1 17 - -
Bpe13g00261 516 Pfam Armadillo/beta-catenin-like repeat 311 349 IPR000225 GO:0005515
Bpe13g00261 516 Pfam U-box domain 30 97 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01559 Bpe-Chr11:11600713 Bpe13g00261 Bpe-Chr13:10558950 1.90E-133 dispersed
Bpe13g00261 Bpe-Chr13:10558950 Bpe11g01609 Bpe-Chr11:12206034 2.77E-35 dispersed
Bpe14g00905 Bpe-Chr14:6745772 Bpe13g00261 Bpe-Chr13:10558950 1.96E-08 dispersed
Bpe13g00261 Bpe-Chr13:10558950 Bpe11g00764 Bpe-Chr11:5755923 1.03E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00261 - - zju:107407140 520.776