Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00263 ATGCAATTTTCAGATTACTATCAAAGCCACTCTCTAATCACCACCTTAAAAGGCCACACCTCCTCCATATCTTCCCTCGCCCTCGCCGGGAACTTCCTCTACACCGGCTCTTCCGACCGAGAAATTCGGCTGTGGCGGCTCTCCGATTCAGACCATCAAGATATATCAGACAACTTCGTAGCAGCCGGGAAAGGTGCAGTTAAATCCCTCGTCGTCTCGGAAGATAATAAACTCTTCAGTGCTCATCAAGATCACAAAATCCGAGTATGGAAAATCTCAACTGATCTCGACCGTCAAAAATATACTCGTTTAGCCACTCTTCCAACTCTCGGCGATCGGACATCGAAGCTTTTACTGACGAAGAATCAAGTTCAGATCAGACGGCATAAAAAATGCAGCTGGGTTCATCACGTCGATACAGTTTCTGCACTAGCTTTATCATTGGAGGAATCACTTATGTACTCAGTTTCATGGGATAGAACTCTGAAAATATGGCGATTAACTGACTTCAAGTGCTTGGAGTCTGTCTCTAACGCTCACGACGACGCCATTAATGCAGTAGCTCTAGCCTCTGACGGATACGTGTACACTGGTTCAGCAGATAAGAAAATCAAGGTGTGGAAAAGAAACCCAGAAGGCAAAACCCATTATCTCGTTGCTTCCTTAGAGAAGCATAATTCCGCCATTAATGCTTTAGCTTTGAACAATAATGGCTCCGTTTTATTTTCCGGTGCGAGCGACAGATCGATCTTAGTTTGGGAAAAGAAGGACGACGGAAATGGTAAGTATATGGACGTAGTGGATGCTTTAAAGGGCCACAGTAAGCCCGTTTTGTGCTTGGCAATGGCGTCTGATTTCTTATGCAGTGGCTCGGCTGATAAAACTATCAGAATCTGGACAAGTGGTGATCAGAGATACACTTGTTTGACAGTTTTGGAAGGGCACACAGCTCCGGTGAAGTGCTTAGCCGCCGCCGTTAGTGAAAGCGACCAAGACGGTGATGAATCATCAGTTCTGGTTTACAGTGGGGGATTGGACTGTGATATTAAGGTGTGGAAGATCAGTCTCCCTCTTCAGCACTATCCCTAA 1089 45.64 MQFSDYYQSHSLITTLKGHTSSISSLALAGNFLYTGSSDREIRLWRLSDSDHQDISDNFVAAGKGAVKSLVVSEDNKLFSAHQDHKIRVWKISTDLDRQKYTRLATLPTLGDRTSKLLLTKNQVQIRRHKKCSWVHHVDTVSALALSLEESLMYSVSWDRTLKIWRLTDFKCLESVSNAHDDAINAVALASDGYVYTGSADKKIKVWKRNPEGKTHYLVASLEKHNSAINALALNNNGSVLFSGASDRSILVWEKKDDGNGKYMDVVDALKGHSKPVLCLAMASDFLCSGSADKTIRIWTSGDQRYTCLTVLEGHTAPVKCLAAAVSESDQDGDESSVLVYSGGLDCDIKVWKISLPLQHYP 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10574481 10575569 - Bpe006386.1 Bpe13g00263 113043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00263 362 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 8 357 - -
Bpe13g00263 362 Gene3D - 214 360 IPR015943 GO:0005515
Bpe13g00263 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 299 IPR001680 GO:0005515
Bpe13g00263 362 SUPERFAMILY WD40 repeat-like 8 354 IPR036322 GO:0005515
Bpe13g00263 362 SMART WD40_4 169 208 IPR001680 GO:0005515
Bpe13g00263 362 SMART WD40_4 215 254 IPR001680 GO:0005515
Bpe13g00263 362 SMART WD40_4 127 166 IPR001680 GO:0005515
Bpe13g00263 362 SMART WD40_4 263 300 IPR001680 GO:0005515
Bpe13g00263 362 SMART WD40_4 9 46 IPR001680 GO:0005515
Bpe13g00263 362 SMART WD40_4 305 353 IPR001680 GO:0005515
Bpe13g00263 362 SMART WD40_4 53 91 IPR001680 GO:0005515
Bpe13g00263 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515
Bpe13g00263 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 254 - -
Bpe13g00263 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 48 - -
Bpe13g00263 362 Pfam WD domain, G-beta repeat 269 299 IPR001680 GO:0005515
Bpe13g00263 362 Pfam WD domain, G-beta repeat 67 91 IPR001680 GO:0005515
Bpe13g00263 362 Pfam WD domain, G-beta repeat 171 208 IPR001680 GO:0005515
Bpe13g00263 362 Pfam WD domain, G-beta repeat 219 253 IPR001680 GO:0005515
Bpe13g00263 362 Pfam WD domain, G-beta repeat 12 45 IPR001680 GO:0005515
Bpe13g00263 362 Pfam WD domain, G-beta repeat 136 165 IPR001680 GO:0005515
Bpe13g00263 362 Pfam WD domain, G-beta repeat 307 353 IPR001680 GO:0005515
Bpe13g00263 362 CDD WD40 12 353 - -
Bpe13g00263 362 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 357 IPR045182 -
Bpe13g00263 362 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Bpe13g00263 362 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Bpe13g00263 362 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Bpe13g00263 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 208 - -
Bpe13g00263 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 254 IPR001680 GO:0005515
Bpe13g00263 362 Gene3D - 5 115 IPR015943 GO:0005515
Bpe13g00263 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 55 IPR001680 GO:0005515
Bpe13g00263 362 Gene3D - 116 213 IPR015943 GO:0005515
Bpe13g00263 362 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 299 - -
Bpe13g00263 362 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 208 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00263 - - - cmo:103483254 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01809 Bpe-Chr11:14481011 Bpe13g00263 Bpe-Chr13:10574481 2.48E-15 dispersed
Bpe13g00263 Bpe-Chr13:10574481 Bpe15g00355 Bpe-Chr15:15083230 8.22E-87 dispersed
Bpe13g00263 Bpe-Chr13:10574481 Bpe10g00794 Bpe-Chr10:14091618 5.66E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013452 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 0 1 1 1 1 1 0 0 1 2 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00263 Bpe_Chr13 FPKM 24.685032 33.57618 6.118103 3.642216 91.514656 73.689972 101.897102 1.940309 2.048133 2.555537