Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00271 AGAATCAGAGAACTTAGAGAGAGAGAAATGGGTGTCGATTATTACAACATACTGAAAGTGAACAGAAATGCGAGAGAGGACGATTTGAAGAAATCGTACAAGAGATTAGCCAGGATATGGCATCCTGACAAGAATCCGGTGAAAAAGCGGGAAGCCGAAGCAAAATTCAAGCAAATTTCTGAAGCTTACGACGTTCTTAGTGATCCTCAGAAGCGTCAGATCTACGATCTTTACGGTGAAGATGCCCTAAAGTCCGGGCAATTCCCTTCGCCTTCTCAGCCGCAGCCGTCGATGTCCTCGACGCGCGGGCACCATAACCAGAACTACCACCGTCAGCCTCCCAACACGACCTCGTTTCGGTTTAATCCAAGGGATGCGGATGATATATACGCGGAGTTTTTTGGGCCGGAGAGTGGCGCCGCTGGTGGTGGAGGTGGCGGTGGGGGGACAAATAGGGGGTTTTTAAGGACTTCGAATGGGGATTTCGGGGTTGGTTCTCAAGCGAAGAAGGTTGCTGCGATTGAGAATGTTTTGTCGTGTAGTTTGGAAGAGCTGTTCAAAGGAGCGCAGAAGAAGATGATGATTTCCAGGAATGTTTATGACGCTTCTGGTTTTTCTTGTAGTAAATTTCGAACTTTGGAAGAGATTTTGATGATCGAGATAAAGCCGGGCTGGAAAAAAGGTACGAAGATCACTTTTCCGGAGAAGGGAAACCAAGAGCCAGGTGTCATTCCAGCAGATATTGTTTTTGTGATAGATGAGAAACCACATTCTGTCTTTAAGCGGGACGGTAACGATCTAGTAATCAATCAAGAACTAACACTTCTAGAAGCTCTCACGGGTAAGACTCTAGAACTCACTACACTTGATGGAAGAAGTCTTGTGATTCCTCTAACCGATATAATAAAACCCAGGACTGAGGTGGTCGTCCCAAATGAAGGGATGCCAAACTCGAAAGAACTGAGTAGGAAGGGGAATTTGAGGATAAATTTCAATGTTAGATATCCGTCAATGCTATCTTTGGATCAAAAATCTGATCTGAAAAGAGTTTTGGGTGGAGTTTCATATTGA 1071 45.0 RIRELREREMGVDYYNILKVNRNAREDDLKKSYKRLARIWHPDKNPVKKREAEAKFKQISEAYDVLSDPQKRQIYDLYGEDALKSGQFPSPSQPQPSMSSTRGHHNQNYHRQPPNTTSFRFNPRDADDIYAEFFGPESGAAGGGGGGGGTNRGFLRTSNGDFGVGSQAKKVAAIENVLSCSLEELFKGAQKKMMISRNVYDASGFSCSKFRTLEEILMIEIKPGWKKGTKITFPEKGNQEPGVIPADIVFVIDEKPHSVFKRDGNDLVINQELTLLEALTGKTLELTTLDGRSLVIPLTDIIKPRTEVVVPNEGMPNSKELSRKGNLRINFNVRYPSMLSLDQKSDLKRVLGGVSY 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10640722 10642419 + Bpe006396.1 Bpe13g00271 113051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00271 356 PANTHER BNAA06G20720D PROTEIN 10 354 - -
Bpe13g00271 356 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 10 354 - -
Bpe13g00271 356 SUPERFAMILY HSP40/DnaJ peptide-binding domain 177 257 IPR008971 GO:0006457|GO:0051082
Bpe13g00271 356 Gene3D - 172 255 - -
Bpe13g00271 356 ProSitePatterns Nt-dnaJ domain signature. 56 75 IPR018253 -
Bpe13g00271 356 Pfam DnaJ C terminal domain 176 336 IPR002939 -
Bpe13g00271 356 MobiDBLite consensus disorder prediction 83 122 - -
Bpe13g00271 356 SUPERFAMILY Chaperone J-domain 12 98 IPR036869 -
Bpe13g00271 356 Pfam DnaJ domain 13 76 IPR001623 -
Bpe13g00271 356 ProSiteProfiles dnaJ domain profile. 13 79 IPR001623 -
Bpe13g00271 356 CDD DnaJ_C 174 339 - -
Bpe13g00271 356 PRINTS DnaJ domain signature 51 71 IPR001623 -
Bpe13g00271 356 PRINTS DnaJ domain signature 71 90 IPR001623 -
Bpe13g00271 356 PRINTS DnaJ domain signature 15 33 IPR001623 -
Bpe13g00271 356 PRINTS DnaJ domain signature 33 48 IPR001623 -
Bpe13g00271 356 SMART dnaj_3 12 71 IPR001623 -
Bpe13g00271 356 MobiDBLite consensus disorder prediction 86 122 - -
Bpe13g00271 356 Gene3D - 257 336 - -
Bpe13g00271 356 SUPERFAMILY HSP40/DnaJ peptide-binding domain 259 345 IPR008971 GO:0006457|GO:0051082
Bpe13g00271 356 CDD DnaJ 13 68 IPR001623 -
Bpe13g00271 356 Gene3D DnaJ domain 12 144 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00271 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - gmx:100781572 489.574
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00271 Bpe15g00616 CCT
Bpe13g00271 Bpe15g00616 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00271 Bpe-Chr13:10640722 Bpe15g00084 Bpe-Chr15:8724656 2.19E-43 dispersed
Bpe02g00583 Bpe-Chr2:3788032 Bpe13g00271 Bpe-Chr13:10640722 4.96E-117 transposed
Bpe03g01000 Bpe-Chr3:29532526 Bpe13g00271 Bpe-Chr13:10640722 3.07E-131 transposed
Bpe14g00720 Bpe-Chr14:5599034 Bpe13g00271 Bpe-Chr13:10640722 5.74E-126 transposed
Bpe13g00271 Bpe-Chr13:10640722 Bpe15g00616 Bpe-Chr15:17040889 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g489 Blo04g00756 Blo16g00200 . . . Bpe13g00271 Bma06g00188 . Cmo13g00951 Cmo18g00102 . . . . . Cpe20g00207 . . . . . . . . . . . . . . . Cone2ag0864 Cone16ag0143 . . . Csa01g00799 Chy12g01317 Cme12g01743 . . Bda11g01684 Bda14g00836 . Bpe15g00616 Bma03g00809 . Sed08g2567 . . . Cma18g00131 Car13g00762 Car18g00123 Cpe09g01061 . Bhi08g01425 Tan05g2072 Cmetu12g0983 Lac10g0382 Hepe07g2276 . . Cla01g01417 Cam01g1483 Cec01g1522 Cco01g1569 Clacu01g1507 Cmu01g1399 Cre01g1319 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006344 2 2 2 2 2 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00271 Bpe_Chr13 FPKM 14.521505 18.913746 11.441081 10.498716 15.474909 13.472534 12.060953 18.405605 20.107843 19.905741