Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00275 ATGGCGGGTGGGAAAATCTTCAATGGCGGTTGTGGTAGGGGTAGTGGTAGTGATGGTTCCGTATCTCCTCTTGTGCTTCAGAATCAAGCTTCAGAGTCTCTTAATAATTTATTGATTTCTGGGTCTTCCTCTTCTAGCTCTCCATCTTTTCTGGGTCCAAGATCCATGGTGAATTTCAAAGATGACGGCAGAAGAAGTGGGTCAAACAGACTGATATTCTGCCCATTTGACGAGAAGGAAAATGGGGAGGATGAAATGGATGAATTCCTTCACCAACCTGAGAAGAAAAGGCGACTGACAGCAGATCAAGTTCAGTTTCTGGAGAAGAGCTTCGAACAGGAAAACAAGCTCGAGCCCGACAGAAAAACTCAACTGGCCAAAGAAATCGGCCTCCAGCCTCGCCAAGTTGCTATCTGGTTTCAGAACCGCCGTGCCCGGTGGAAAACAAAGCAACTCGAGAAGGATTTCGAGGTTTTGCAGTCCAACTACGATACCCTCAAGGCAGAATACGAGAATCTCCTCCATGAGAAGGATAAGCTAAAAGCAGAGGTTCTTCTCCTCTCGGAAAAGCTTCTGCTCAAAGAGAAAGACAAGGAAATCTTGGAATTCGAAGAACCACGATTGAATGAAATGGAAAGATCAGTTTCGAAGGAGGATGAAGAAGACTCCAACGCCATGAATCTAAGCTGTAAGCTGGAAGAAGCTAGCTCAGTCAAAAGTGATATATTCAATTCAGACAAGTCCGATATATCAAACGAAGATGAAGACAGTCTGGAAAAGACCCTCTTCCCTCCGTACATCTTCCCCAAGCTCGAAGACGAAGATTACTCCGACCCACCGACGAGCTCCTGCAGTTTCGGATTCCCCGTCGAAGACAATGCCTTCTGGTCATGGTCCTACTGA 903 46.18 MAGGKIFNGGCGRGSGSDGSVSPLVLQNQASESLNNLLISGSSSSSSPSFLGPRSMVNFKDDGRRSGSNRLIFCPFDEKENGEDEMDEFLHQPEKKRRLTADQVQFLEKSFEQENKLEPDRKTQLAKEIGLQPRQVAIWFQNRRARWKTKQLEKDFEVLQSNYDTLKAEYENLLHEKDKLKAEVLLLSEKLLLKEKDKEILEFEEPRLNEMERSVSKEDEEDSNAMNLSCKLEEASSVKSDIFNSDKSDISNEDEDSLEKTLFPPYIFPKLEDEDYSDPPTSSCSFGFPVEDNAFWSWSY 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10675184 10676402 - Bpe006400.1 Bpe13g00275 113055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00275 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 48 297 - -
Bpe13g00275 300 Gene3D - 89 156 - -
Bpe13g00275 300 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Bpe13g00275 300 CDD homeodomain 95 151 IPR001356 GO:0003677
Bpe13g00275 300 Pfam Homeobox associated leucine zipper 150 191 IPR003106 GO:0006355|GO:0043565
Bpe13g00275 300 Coils Coil 149 190 - -
Bpe13g00275 300 MobiDBLite consensus disorder prediction 1 24 - -
Bpe13g00275 300 Pfam Homeodomain 95 148 IPR001356 GO:0003677
Bpe13g00275 300 SUPERFAMILY Homeodomain-like 85 152 IPR009057 -
Bpe13g00275 300 SMART HOX_1 93 154 IPR001356 GO:0003677
Bpe13g00275 300 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Bpe13g00275 300 PRINTS Lambda-repressor HTH signature 130 146 IPR000047 GO:0003677
Bpe13g00275 300 PRINTS Lambda-repressor HTH signature 121 130 IPR000047 GO:0003677
Bpe13g00275 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 297 IPR045224 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00275 - - - jre:108999210 313.153
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00275 Bpe15g00614 CCT
Bpe13g00275 Bpe15g00614 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00244 Bpe-Chr9:1772510 Bpe13g00275 Bpe-Chr13:10675184 1.26E-19 dispersed
Bpe13g00275 Bpe-Chr13:10675184 Bpe13g00467 Bpe-Chr13:12180833 7.88E-56 dispersed
Bpe13g00275 Bpe-Chr13:10675184 Bpe15g00614 Bpe-Chr15:17020322 1.37E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22266 PF00046 Homeodomain 4.10E-17 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00275 Bpe_Chr13 FPKM 1.342435 0.6452 1.68066 1.749175 3.314966 3.547716 2.733757 1.142685 0.993477 0.942122