Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00289 ATGGTTAATGCAGTCAGATTGTTTGATACAATTCCTCAACCAAATGTCATTTCCTGGAATTTAGTAATTTCGGGATATAATCAGAACTCTTCATTTGCTGATTCATGGAGGAGTTTTTGCAAAATGCACTCTTCAGGCTGCGAACCAAGTGAGATAACTTATGGGATCGTTCTTTCTGCTTGTACCGCCCTGCAATCCCCCAAGCTTGGTATGCATATTTATTCTCTTGCGATGAAGAAAGGATTATTTTCCAATGGTTTTGTTCGGACCGGAGTTATCGACTTATTTTCAAAAAATCACAGCTTTGAGGATGCTCTAAGAGTGTTTCATGATGTTTCATGTCAGAACGTGGTCTGCTGGAATGCCATTATTTCAGGTGCAGTGATGAATGGAGATCATTTGATGGCTTTAGATCTTTTTCACCTAATGCAAGATAGATTTGTGCTGCCAAATAGTTTTACCTTTTCCAGCATTCTATCCGCTTGCACTGCCCTCGAAGAACTTGAAGCTGGAAGAAAAGTGCAAGGGTTGGTGATCAAATATGGGGAACAAGATGTTTTTGTCGGAACAGCTCTTGTCGATTTGTATGCCAAATGTGGAGATATGAATGAAGCTGTGAAGAAATTCCTTGAGATGCCAATTCACAATGTGGTATCATGGACTACCATAATATCTGGTTTTGTACACAAAAATGATATTTATTTGGCCTTTGAATATTTTAAAAAGATGAGGAAAACTGGGGAGGAAATAAATAGCTATACTGTTACTAGTATACTTACAGTCAGTGCTGTAATGGGTTTGCTAAAAGAGGCAGTTCAACTCCATTGTTGGATTCTTAAAGCTGGTTTCTTGTCAGATGCAGTGGTGGGAGCTGCTTTAGTTAATATGTATTCGAAAATCGGAGCCGTTGATTTTTCTGCAGACGTATTTGGAGAGATGAAAGATAAGAAGAGTCCTGGTTTATGGACTGCCATGTTGAGTTCCTTTGCTCATAATGAGGATTCTGAAAGAGCTACTGAATTTTTCAGGGGAATGTTGAGGGAAAATGTGGAACCAGATAAGTTTTCGACTTCTAGTATCTTAAGTGTGACAGACAGTTTGAAATTTGGGAAGCAATTGCATAGTTTAACGCTTAAAAATGGATTAGTCTCCGATATTTCTGTTGGTAGTTCTCTTTCAACGATGTATTCAAAGTGTGGAAATATAGAGGACTCTTATGGAGTTTACGAAAATATGGTAGAAAAAGATAATGTTTCATGGGCTTCGATGATTGCAGGCTTCTCTGAACATGGCTTCTCTGATGAAGCCATTCGAATATTCCGAGAAATGTTGTTTGAAGAGACTAAACCTGATCAAATGACGTTAACTGCTGTTTTGACTGCGTGTTTTAATCTTCGATCCTTACGGACGAGTCATGAAATTCACGGTTTTGCTTTTCGTGCCGGATTTCACGAAGAAAATAGTCTTTGCAGTGCACTTGTGACCGTGTATTCAAAGGCCGGTTCCCTCGAAATAGCGAGAAGGGTGTTCGAAATGTTACCTCAAAAGGATCATATTTCATGTACATCATTGATTTCTGGATATGCTCAACGTAAGTGCGTAAAAGAAGCACTTCTTTTGTTCGATGATATGAGGTCGGCTAATTTAGCCACTGATGCCTCAATTTCTTCTATTTTTGGAGCCATTGCTCTTCTGAATAGGCCAGGAATTGGAATTCAACTTCATGCTCACACCACAAAAGTGGGCTTGGAGAAAGATGTTTCTGTTGGCAGTTCACTTGTTATGATGTACTCAAAATGTGGAAACATCGAAGATTGCCTCCGAGCATTTGATCAGATTGAGAAACCTGACTTGATCGGATGGACAGCTTTGATTGTGAGCTATGCTCAACACGGAAAAGGCACAGAGGCATTAAGTGTCTATGAGCTTATGAAGAAGGAAGGAATCAAACCCGATCCCGTAACCTTTGTCGGGGTTTTATCTGCATGTAGCCATAACGGGTTAGTTGAAGAAGCATATTTCCATCTCGATTCAATGGCTAAAGACTACGGACTCGAGCCGGGCCATCGTCATTACGCATGTATGGTTGATCTTCTAGGTCGGTCGGGCAGACTCAAAGAGGCCGAAAGGTTCATTAGCAATATACCCATCGATCCCGATGCTCTAGTGTGGGGGACCCTTCTTGCTGCTTGTAAAGTACACGGTGATATCGACCTCGGAAAGTTGGCAGCAAGAAAGGTTATGGAGTTGGAGCCTCGTGATAGTGGGGCTTATGTTTCTCTATCGAATATTTGTGCTGATTTGGGCAACTGGGACGATGTCTTGAAAATTAGAAGCGATATGAAGGAAACAGGGGTGGCGAAGGATCTTGGTTGGAGTTATGTGTGA 2388 40.87 MVNAVRLFDTIPQPNVISWNLVISGYNQNSSFADSWRSFCKMHSSGCEPSEITYGIVLSACTALQSPKLGMHIYSLAMKKGLFSNGFVRTGVIDLFSKNHSFEDALRVFHDVSCQNVVCWNAIISGAVMNGDHLMALDLFHLMQDRFVLPNSFTFSSILSACTALEELEAGRKVQGLVIKYGEQDVFVGTALVDLYAKCGDMNEAVKKFLEMPIHNVVSWTTIISGFVHKNDIYLAFEYFKKMRKTGEEINSYTVTSILTVSAVMGLLKEAVQLHCWILKAGFLSDAVVGAALVNMYSKIGAVDFSADVFGEMKDKKSPGLWTAMLSSFAHNEDSERATEFFRGMLRENVEPDKFSTSSILSVTDSLKFGKQLHSLTLKNGLVSDISVGSSLSTMYSKCGNIEDSYGVYENMVEKDNVSWASMIAGFSEHGFSDEAIRIFREMLFEETKPDQMTLTAVLTACFNLRSLRTSHEIHGFAFRAGFHEENSLCSALVTVYSKAGSLEIARRVFEMLPQKDHISCTSLISGYAQRKCVKEALLLFDDMRSANLATDASISSIFGAIALLNRPGIGIQLHAHTTKVGLEKDVSVGSSLVMMYSKCGNIEDCLRAFDQIEKPDLIGWTALIVSYAQHGKGTEALSVYELMKKEGIKPDPVTFVGVLSACSHNGLVEEAYFHLDSMAKDYGLEPGHRHYACMVDLLGRSGRLKEAERFISNIPIDPDALVWGTLLAACKVHGDIDLGKLAARKVMELEPRDSGAYVSLSNICADLGNWDDVLKIRSDMKETGVAKDLGWSYV 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10758179 10760566 - Bpe006414.1 Bpe13g00289 113069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00289 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Bpe13g00289 795 PANTHER OS07G0578800 PROTEIN-RELATED 270 367 IPR045215 GO:0003723|GO:0009451
Bpe13g00289 795 Gene3D Tetratricopeptide repeat domain 367 476 IPR011990 GO:0005515
Bpe13g00289 795 Gene3D Tetratricopeptide repeat domain 477 565 IPR011990 GO:0005515
Bpe13g00289 795 TIGRFAM PPR: pentatricopeptide repeat domain 218 251 IPR002885 -
Bpe13g00289 795 TIGRFAM PPR: pentatricopeptide repeat domain 621 652 IPR002885 -
Bpe13g00289 795 TIGRFAM PPR: pentatricopeptide repeat domain 418 451 IPR002885 -
Bpe13g00289 795 TIGRFAM PPR: pentatricopeptide repeat domain 519 549 IPR002885 -
Bpe13g00289 795 TIGRFAM PPR: pentatricopeptide repeat domain 17 51 IPR002885 -
Bpe13g00289 795 TIGRFAM PPR: pentatricopeptide repeat domain 322 353 IPR002885 -
Bpe13g00289 795 TIGRFAM PPR: pentatricopeptide repeat domain 118 151 IPR002885 -
Bpe13g00289 795 PANTHER OS07G0578800 PROTEIN-RELATED 472 584 IPR045215 GO:0003723|GO:0009451
Bpe13g00289 795 PANTHER OS07G0578800 PROTEIN-RELATED 367 486 IPR045215 GO:0003723|GO:0009451
Bpe13g00289 795 PANTHER OS07G0578800 PROTEIN-RELATED 584 795 IPR045215 GO:0003723|GO:0009451
Bpe13g00289 795 Gene3D Tetratricopeptide repeat domain 636 753 IPR011990 GO:0005515
Bpe13g00289 795 Gene3D Tetratricopeptide repeat domain 236 366 IPR011990 GO:0005515
Bpe13g00289 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Bpe13g00289 795 Gene3D Tetratricopeptide repeat domain 1 68 IPR011990 GO:0005515
Bpe13g00289 795 Gene3D Tetratricopeptide repeat domain 69 180 IPR011990 GO:0005515
Bpe13g00289 795 Pfam PPR repeat family 616 664 IPR002885 -
Bpe13g00289 795 Pfam PPR repeat family 415 463 IPR002885 -
Bpe13g00289 795 Pfam PPR repeat family 14 61 IPR002885 -
Bpe13g00289 795 Pfam PPR repeat family 116 162 IPR002885 -
Bpe13g00289 795 Pfam PPR repeat family 216 260 IPR002885 -
Bpe13g00289 795 PANTHER OS09G0413300 PROTEIN 270 367 - -
Bpe13g00289 795 Pfam E motif 734 795 IPR046848 -
Bpe13g00289 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
Bpe13g00289 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Bpe13g00289 795 Pfam PPR repeat 520 548 IPR002885 -
Bpe13g00289 795 Pfam PPR repeat 591 614 IPR002885 -
Bpe13g00289 795 Pfam PPR repeat 322 350 IPR002885 -
Bpe13g00289 795 Pfam PPR repeat 190 213 IPR002885 -
Bpe13g00289 795 Pfam PPR repeat 490 516 IPR002885 -
Bpe13g00289 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Bpe13g00289 795 SUPERFAMILY TPR-like 393 775 IPR011990 GO:0005515
Bpe13g00289 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Bpe13g00289 795 PANTHER OS09G0413300 PROTEIN 367 486 - -
Bpe13g00289 795 PANTHER OS09G0413300 PROTEIN 584 795 - -
Bpe13g00289 795 PANTHER OS07G0578800 PROTEIN-RELATED 1 264 IPR045215 GO:0003723|GO:0009451
Bpe13g00289 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 754 788 IPR002885 -
Bpe13g00289 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 617 651 IPR002885 -
Bpe13g00289 795 PANTHER OS09G0413300 PROTEIN 472 584 - -
Bpe13g00289 795 PANTHER OS09G0413300 PROTEIN 1 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00289 - - - bhj:120082449 1096.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00289 Bpe-Chr13:10758179 Bpe12g00005 Bpe-Chr12:46449 4.74E-36 dispersed
Bpe13g00289 Bpe-Chr13:10758179 Bpe08g00390 Bpe-Chr8:2396749 4.23E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g545 . Blo16g00187 . . . Bpe13g00289 Bma06g00176 . Cmo13g01182 . . . . . . Cpe20g00022 . . . . . . . . . . . . . . . . . . . . Csa01g00539 Chy12g01549 . . . . . . . . . . . . Cma13g01128 . Car13g00963 . . . . . . . . . . Cla04g01204 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012059 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 2 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00289 Bpe_Chr13 FPKM 7.125219 6.873881 2.095819 2.286455 0.0 0.0 0.149612 2.546372 2.76078 3.407586