Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00300 ATGGCGCTGTTCAGAAGGTTCTTCTACCGGAAGCCACCGGATCGTCTCCTAGAGATCTCTGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCTACGGATGTCTTGGAAGAAGATGAGTATAAAGTGTACTTGGGTGGGATTGTGCCACAGCTGCAGGACTACTTCAACGATGCTTCTTTCATGGTGTTTAACTTCAGAGAAGGGGATAGGCGAAGCCAAATATTTGATATTTTGTCGGAGTATGACATGACAGTCATGGACTACCCTCGCCAATATGAGGGGTGTCCTCTGCTACCATTAGAGATGATCCACCACTTCCTTAAATCTAGTGAGAGCTGGTTGTCTTTAGAGGGGCAGCAAAACGTACTATTGATGCATTGTGAGAGGGGAGGGTGGCCTGTCCTTGCATTCATGCTTGCAGCATTGCTTTTGTACCGGAAACAATTCAATGGGGAGCTAAAGACCCTTGAAATGGTTTACAAACAAGCTCCCAAGGAACTTATTCATCTTTTATCTCCTCTAAATCCACAGCCTTCTCAGCTGAGATATCTTCAATATATTTCTAGGAGAAATTTAGGGTCTGATTGGGCACCGACCGAGACACCTCTTTTTTTGGATTGTCTGATACTAAGAGTCATCCCTCTGTTTGATGGAGGGAAAGGGTGCAGGCCTGTTATTCGCATTTATGGTCAGGACCCGTTAACACCAGCCAATAGGAGTTCAAAGCTTCTGTATTCAACTTCAAAGACGAAAAAGCACGTCCACCATTACTTACAGGCAGAGTGTATACTGGTGAAAATTGATATACACTGTCGAGTCCAAGGTGATGTTGTTCTTGAGTGTATCCATTTAGATGGAGATCTTGTGCGGGAGGAGATGATGTTTAGAGTTATGTTTCACACAGCTTTTGTGCGGTCAAACAATTTGATGTTTAACCGTGATGAAATCGACATGTTGTGGGATACCAAGGATCAGTTTCCCAGGGACTTCGAAGCAGAGGTTTGTTTTTCGCATGCTGATGCTGCTGTGCCTAATCTCAGCAAAGTTGTGGCACATATTGATGAGAATGAGTCGGAATTTGCTTCGCCTGAGGAGTTTTATGAGGTTGAAGAGATTTTTAGCAATGTAGTAGACGCAGAAGTAAAGGGGGACTATGATCCGCAAGAGAATCCAAGAAATAGTTCAGATCAGAAAGAAGTTTGGAAGGAGGACTTGGATCCTTCCCATTTTCAAGACTGTGCATCAGATGATGGGAATCGGAAACATGATCTAAAGATGGATTATAATAATGATTCAGTGAAGGACATTGCTGTTGACGACGTCAAGTATAAAATTATTGAGAAAGTGGATTCAGATGATTCAGTGAAGGATATTGCTGTCGATGATGGGGATATTGCGCCAAACTTTTCATTAGTTGAGGTCAAGAAGCTGAAAGATATTACCGAGGAATTGATAGTAGATGGTTTTGAAAAATTGCAGGAAATGGAAATAATGGGGGATGAAGAAATTATATCACAAAGACAAGAGTCGAAAAAATTAAGAGCTGATGGCTCTAGACTGAGATCTGAAAAATCACCACCACTTGCTTCAAGGGAACATCCCACTTCTGCAAAATCAACCAATGAAACTGGTGTAGCCAAGAAAACGATTGAAGAGCAGGAAACTCAGGGATTTCTTGCAAAACAACCAAAGCCCAATGTCATATCACGGTGGATACCTCCTAACAAAGGATCTCAGGCAAATTCGGCTCGTGTATCCTACCCACCATCTAGATATCATAGTGCACCAGCTGCTATTACTAGCACTCTTCCCTCTGAAGATGATGATTCAAATTCAAAGTCAGAGGACGATTCTGCTACCTCGGCTAATTGGATGTCAAATGGTGACCCAAGTGACCAAAAAGATTACAAAGTATATCCCGTGCGGGCCTCAAGCTCTGCACCTGAGGCACTCACTCATATCTCTCAGTTATCTCAACCCATTAAAGAGAATTTACCACCACCTCCTCCGCCGCCGCCGCCACCAACAACGTCGCCATCTCTGCTTGGTGGGGGGGCTCCTCTTAGAGCACCTTCTTTTCCACTTTCCCAATTAAAAGGGCCGCCACCTCCGCCACCTCCTCCAATGCGAGTACTGCCACCGCCACCACCTCCTCCAATGCGAGTACCGCCACCTCCGCCCCCTCCTCTTATGCATGGAGTGCCACCTCCTCCACCACCTCCATTTCGAGGAGCGCCACCTCCTCCACCTCCTCCATTTCAAGGAACGCCTCCTCCGCCACCACCTCCTATGCACGGAGTGCCTCCTCCTCCACCACCTCTTGTGCGCAGTGGACCACCACCTCCTCCAATGCAAGGAGCACCTCCTCCGCTGCCACCTCCATTACGAGCAGGAGCGCCACCTCCGCCGCCACCTCCATTACGAGCAGGAGCGCCACCTCCGCCAATCCGAGCCGGAGCACCACCTCCTCCACCACCACCAATGCATGGAGCAACCCCTCCACCTCGTGGATCAACACCTCCACCTCGTGGGTCAACACCTCCACCTCCCGGAGGTGGTCCCCCTCCCCCTCCTCCACCAGGGGCTCGTGTTCCGGGCCCTCCTGCTCCTCCTAAACTTCCAGGTGGTGGGCCTCCTCCACCTCCACCTTTAGGTGCCAAAGGAGCTAATGCTTCTCCTGATGCTAGAGGTCTTGCAGCAGGGAGAGGTCGTGGGCTGTCACGGCCTTCAAGCATGAATGCTGTAGGACCTCGACGATCCTCTTTGAAGCCTCTGCACTGGAGCAAAGTGACTAGAGCCTTGCAAGGGAGCTTATGGGATGAAATCCAAAGATATGGAGAGCCTCAAATTGCACCAGAGTTTGATGTATCTGAGTTAGAGACCCTTTTCTCTGCAACTGTCCCAAAACCTGCTGAGGCAGGAGGCAAATCAGGAGGCCGACGAAAGTCAGTCGGATCCAAGACTGACAAAGTGCATTTGATTGACCTAAGAAGAGCGAATAACACTGAGATTATGCTCACCAAAGTTAAGATGCCACTTTCTGATATGATGGCTGCAGTGCTGGCAATGGATGAGTCAGTCTTAGATGTTGACCAGGTGGAAAATCTCATTAAGTTTTGTCCAACAAAGGAGGAGATGGAACTTCTCAAGGGATACACAGGGGACAAAGACAGTCTTGGAAAGTGTGAACAGTATTTTATGGAGCTGATGAAAGTACCTCGGGTGGAGTCGAAGTTAAGAGTATTTTCTTTCAAAATTCAATTTCGTTCTCAGATTTCAGAATTCAAAAAGAGTTTAAACACCATAAACTCTGCTTGTGAAGAGGTCAGGAATTCTGTTAAACTAAAGGAGATTATGAAGAAAATCCTTTATCTGGGAAATACATTAAACCAAGGAACTGCAAGGGGTTCTGCAATTGGCTTCAAGTTGGACAGTCTTTTGAAGCTCAGTGACACCCGTGCTTCTAATAGTAAAATGACACTTATGCATTACCTTTGCAAGGTCCTTGCTTCTCGGTCACCAACACTGCTTGATTTCCATCTAGATGTGGGCAGTCTAGAAGCTGCATCTAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCAATAATTAAAGGATTAGAGAAGGTCAAGCAGGAGCTAGTTGCCTCTGAAAGTGATGGTCCTGTCTCGGATGTTTTTCGTAAGACATTGAAAGACTTTGTGGACATCGCGGAGACTGAGGTGGCATCCGTGACAAATTTATACTCTGTGGTGGGTAGAAATGCAGATGCACTTGCGCTATATTTTGGTGAGGATCCTGCCCGTTGCCCATTTGAGCAAGTTGTAGCGACTCTCTTAAATTTTATAAGAATGTTTCGTAAAGCCCATGAAGAGAACTACAAACAGGCCGAATTAGAAAAGAAGAAAGCAGAGAAG 3921 46.42 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYLGGIVPQLQDYFNDASFMVFNFREGDRRSQIFDILSEYDMTVMDYPRQYEGCPLLPLEMIHHFLKSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAALLLYRKQFNGELKTLEMVYKQAPKELIHLLSPLNPQPSQLRYLQYISRRNLGSDWAPTETPLFLDCLILRVIPLFDGGKGCRPVIRIYGQDPLTPANRSSKLLYSTSKTKKHVHHYLQAECILVKIDIHCRVQGDVVLECIHLDGDLVREEMMFRVMFHTAFVRSNNLMFNRDEIDMLWDTKDQFPRDFEAEVCFSHADAAVPNLSKVVAHIDENESEFASPEEFYEVEEIFSNVVDAEVKGDYDPQENPRNSSDQKEVWKEDLDPSHFQDCASDDGNRKHDLKMDYNNDSVKDIAVDDVKYKIIEKVDSDDSVKDIAVDDGDIAPNFSLVEVKKLKDITEELIVDGFEKLQEMEIMGDEEIISQRQESKKLRADGSRLRSEKSPPLASREHPTSAKSTNETGVAKKTIEEQETQGFLAKQPKPNVISRWIPPNKGSQANSARVSYPPSRYHSAPAAITSTLPSEDDDSNSKSEDDSATSANWMSNGDPSDQKDYKVYPVRASSSAPEALTHISQLSQPIKENLPPPPPPPPPPTTSPSLLGGGAPLRAPSFPLSQLKGPPPPPPPPMRVLPPPPPPPMRVPPPPPPPLMHGVPPPPPPPFRGAPPPPPPPFQGTPPPPPPPMHGVPPPPPPLVRSGPPPPPMQGAPPPLPPPLRAGAPPPPPPPLRAGAPPPPIRAGAPPPPPPPMHGATPPPRGSTPPPRGSTPPPPGGGPPPPPPPGARVPGPPAPPKLPGGGPPPPPPLGAKGANASPDARGLAAGRGRGLSRPSSMNAVGPRRSSLKPLHWSKVTRALQGSLWDEIQRYGEPQIAPEFDVSELETLFSATVPKPAEAGGKSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLSDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKDSLGKCEQYFMELMKVPRVESKLRVFSFKIQFRSQISEFKKSLNTINSACEEVRNSVKLKEIMKKILYLGNTLNQGTARGSAIGFKLDSLLKLSDTRASNSKMTLMHYLCKVLASRSPTLLDFHLDVGSLEAASKIQLKSLAEEMQAIIKGLEKVKQELVASESDGPVSDVFRKTLKDFVDIAETEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVVATLLNFIRMFRKAHEENYKQAELEKKKAEK 1307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10830282 10841722 - Bpe024935 Bpe13g00300 113080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00300 1307 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Bpe13g00300 1307 SMART PTEN_C2_2 198 338 IPR014020 -
Bpe13g00300 1307 MobiDBLite consensus disorder prediction 662 680 - -
Bpe13g00300 1307 MobiDBLite consensus disorder prediction 616 630 - -
Bpe13g00300 1307 MobiDBLite consensus disorder prediction 572 588 - -
Bpe13g00300 1307 Pfam Formin Homology 2 Domain 919 1287 IPR015425 -
Bpe13g00300 1307 Gene3D - 205 337 - -
Bpe13g00300 1307 MobiDBLite consensus disorder prediction 967 986 - -
Bpe13g00300 1307 MobiDBLite consensus disorder prediction 696 887 - -
Bpe13g00300 1307 SUPERFAMILY Formin homology 2 domain (FH2 domain) 989 1307 - -
Bpe13g00300 1307 Coils Coil 1288 1307 - -
Bpe13g00300 1307 MobiDBLite consensus disorder prediction 503 528 - -
Bpe13g00300 1307 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Bpe13g00300 1307 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Bpe13g00300 1307 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Bpe13g00300 1307 PANTHER FORMIN-J 1 1307 - -
Bpe13g00300 1307 Gene3D Formin, FH2 domain 912 1299 IPR042201 -
Bpe13g00300 1307 MobiDBLite consensus disorder prediction 503 920 - -
Bpe13g00300 1307 SMART it6_source 699 1307 IPR015425 -
Bpe13g00300 1307 MobiDBLite consensus disorder prediction 532 546 - -
Bpe13g00300 1307 ProSiteProfiles Formin homology-2 (FH2) domain profile. 912 1307 IPR015425 -
Bpe13g00300 1307 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Bpe13g00300 1307 Coils Coil 1194 1218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00300 - - - qsu:112036396 881.708
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00300 Bpe15g00594 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00300 Bpe-Chr13:10830282 Bpe14g00599 Bpe-Chr14:4986455 1.60E-161 dispersed
Bpe13g00300 Bpe-Chr13:10830282 Bpe15g00594 Bpe-Chr15:16852546 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe10g00755 . 126 615 FH2 protein (formin) Gene Family AT3G25500 66.7 1.2e-170 597.4
Bpe15g00301 CCT 431 868 FH2 protein (formin) Gene Family AT3G25500 59.2 3.9e-132 469.5
Bpe13g00127 CCT 423 883 FH2 protein (formin) Gene Family AT3G25500 56.2 2.9e-127 453.4
Bpe05g00226 . 473 872 FH2 protein (formin) Gene Family AT3G25500 55.4 9.4e-110 395.2
Bpe10g00755 . 177 628 FH2 protein (formin) Gene Family AT2G43800 63.7 3.7e-147 519.2
Bpe15g00301 CCT 435 884 FH2 protein (formin) Gene Family AT2G43800 53.8 8.8e-125 444.9
Bpe13g00127 CCT 421 904 FH2 protein (formin) Gene Family AT2G43800 50.9 2.7e-118 423.3
Bpe07g00592 BCT 30 318 FH2 protein (formin) Gene Family AT4G15200 58.1 9.4e-62 234.6
Bpe14g00693 BCT 265 553 FH2 protein (formin) Gene Family AT4G15200 54.5 1.2e-56 217.6
Bpe11g00522 CCT,ECH 498 647 FH2 protein (formin) Gene Family AT4G15200 62.3 5.0e-47 185.7
Bpe08g01143 CCT,ECH 207 354 FH2 protein (formin) Gene Family AT4G15200 61.1 4.7e-45 179.1
Bpe11g00522 CCT,ECH 270 963 FH2 protein (formin) Gene Family AT5G54650 52.2 2.1e-166 583.2
Bpe07g00592 BCT 172 639 FH2 protein (formin) Gene Family AT5G54650 64.3 9.7e-164 574.3
Bpe14g00693 BCT 412 882 FH2 protein (formin) Gene Family AT5G54650 61.3 2.5e-151 533.1
Bpe08g01143 CCT,ECH 217 621 FH2 protein (formin) Gene Family AT5G54650 65.0 1.6e-145 513.8
Bpe05g00226 . 471 877 FH2 protein (formin) Gene Family AT5G54650 52.0 2.3e-109 393.7
Bpe15g00301 CCT 27 887 FH2 protein (formin) Gene Family AT5G67470 54.3 1.2e-219 760.0
Bpe13g00127 CCT 34 911 FH2 protein (formin) Gene Family AT5G67470 54.3 7.6e-201 697.6
Bpe11g01834 . 441 920 FH2 protein (formin) Gene Family AT5G67470 56.7 1.8e-133 473.8
Bpe10g00755 . 173 632 FH2 protein (formin) Gene Family AT5G67470 57.2 9.1e-130 461.5
Bpe05g00226 . 476 875 FH2 protein (formin) Gene Family AT5G67470 53.4 3.1e-109 393.3
Bpe10g00820 CCT,ECH 333 815 FH2 protein (formin) Gene Family AT1G59910 50.9 1.8e-120 430.6
Bpe11g01744 CCT,ECH 267 739 FH2 protein (formin) Gene Family AT1G59910 50.3 2.9e-118 423.3
Bpe13g00300 CCT 994 1304 FH2 protein (formin) Gene Family AT5G07650 75.6 1.3e-127 454.1
Bpe15g00594 CCT 1490 1809 FH2 protein (formin) Gene Family AT5G07650 72.2 2.5e-123 439.9
Bpe14g00599 . 1000 1332 FH2 protein (formin) Gene Family AT5G07650 58.2 2.3e-100 363.6
Bpe13g00300 CCT 918 1305 FH2 protein (formin) Gene Family AT5G07770 68.4 1.1e-139 493.8
Bpe15g00594 CCT 1414 1804 FH2 protein (formin) Gene Family AT5G07770 65.8 2.0e-133 473.0
Bpe14g00599 . 936 1345 FH2 protein (formin) Gene Family AT5G07770 53.6 1.2e-106 384.0
Bpe14g00599 . 930 1334 FH2 protein (formin) Gene Family AT3G32400 69.2 9.4e-153 537.0
Bpe13g00300 CCT 906 1307 FH2 protein (formin) Gene Family AT3G32400 63.7 1.1e-137 486.9
Bpe15g00594 CCT 1414 1809 FH2 protein (formin) Gene Family AT3G32400 64.3 1.1e-137 486.9
Bpe14g00599 . 1 1334 FH2 protein (formin) Gene Family AT2G25050 50.7 1.8e-303 1038.9
Bpe13g00300 CCT 919 1307 FH2 protein (formin) Gene Family AT5G07780 62.3 6.8e-121 431.0
Bpe15g00594 CCT 1415 1809 FH2 protein (formin) Gene Family AT5G07780 60.6 5.4e-118 421.4
Bpe14g00599 . 937 1332 FH2 protein (formin) Gene Family AT5G07780 51.1 2.1e-93 339.7
Bpe13g00300 CCT 1 1307 FH2 protein (formin) Gene Family AT5G07740 51.0 0.0e+00 1102.8
Bpe13g00300 CCT 993 1307 FH2 protein (formin) Gene Family AT5G07760 74.1 1.1e-124 444.5
Bpe15g00594 CCT 1489 1809 FH2 protein (formin) Gene Family AT5G07760 71.1 2.8e-120 429.9
Bpe14g00599 . 1011 1332 FH2 protein (formin) Gene Family AT5G07760 60.1 4.7e-99 359.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00300 Bpe_Chr13 FPKM 5.567376 7.77059 15.558189 13.161398 5.694586 6.565482 7.160847 15.723971 15.806285 17.057072