Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00302 ATGTCCGACAGTGAAGATCATCAGTTTGAATCCAAGGCCGACGCCGGCGCTTCCAAAACCTACCCTCAGCAAGCTGGTACTGTTCGCAAGAATGGCTACATCGTCATCAAGGCCCGCCCTTGCAAGGTTGTTGAAGTTTCTACCTCCAAGACTGGAAAACATGGCCATGCTAAGTGCCACTTTGTTGGAATTGACATATTCACGGGCAAGAAGTTTGATGATATAGTTCCCTCTTCCCATAACTGTGATGTTCCTCATGTTAATCGAACTGATTATCAGCTTATCGATATTTCAGAGGATGGATTTGTGAGCTTGCTGACAGAAAATGGAAACACTAAGGATGATCTGAGGCTCCCAAGTGATGATGGTTTGCTTACCCAGATAAAGGAGGGTTTTTCTGACGGTAAAGATCTTGTTGTCACTGTGATGTCTGCCATGGGAGAAGAGCAGATTTGTGCTCTGAAGGACATTGGCCCTAAGTAG 483 45.55 MSDSEDHQFESKADAGASKTYPQQAGTVRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKFDDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPSDDGLLTQIKEGFSDGKDLVVTVMSAMGEEQICALKDIGPK 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10857672 10859522 - Bpe006428.1 Bpe13g00302 113082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00302 160 SUPERFAMILY Nucleic acid-binding proteins 87 157 IPR012340 -
Bpe13g00302 160 Gene3D - 1 86 IPR014722 -
Bpe13g00302 160 SUPERFAMILY Translation proteins SH3-like domain 16 94 IPR008991 -
Bpe13g00302 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 154 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe13g00302 160 CDD S1_eIF5A 87 157 - -
Bpe13g00302 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe13g00302 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe13g00302 160 MobiDBLite consensus disorder prediction 1 22 - -
Bpe13g00302 160 SMART eIF_5a_2 86 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe13g00302 160 PIRSF Transl_init_eIF5A 1 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe13g00302 160 PANTHER BNAA07G09420D PROTEIN 1 157 - -
Bpe13g00302 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 51 58 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe13g00302 160 Gene3D - 87 159 IPR012340 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe13g00302 Bpe15g00593 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00302 Bpe-Chr13:10857672 Bpe14g00600 Bpe-Chr14:4994417 5.46E-46 dispersed
Bpe10g00890 Bpe-Chr10:14632518 Bpe13g00302 Bpe-Chr13:10857672 1.87E-105 wgd
Bpe11g01654 Bpe-Chr11:12682755 Bpe13g00302 Bpe-Chr13:10857672 1.39E-104 wgd
Bpe13g00302 Bpe-Chr13:10857672 Bpe15g00593 Bpe-Chr15:16847999 1.80E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00302 K03263 - jre:108997403 312.383