Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00328 ATGGCGGTTGACTTAGATTCATTGTCTCCTTCCCCCAATAAACGCTTGAAAACCTTAGCCACGACCTCGACCTTCAATTTTCCGTTCAATGTCAACTCGAGAGCTAATAAACTGGAGAATTCTTCGCAAATCTGTGTTATTTGCTTGTCGGAAGATGGGAAAGCTGACGCAGGCCAGCTCAATTGCTGTGACCACTACTTTTGCTTTGTTTGTATTGTCGAATGGGGGAAGATTGAGTCTAAGTGCCCCTCGTGCAAGCGTAGATTTTCCACTATTTGCAGGCTGTCAATTGATGGTTCTCGTCGACGTGTAGTTAAGATCCCTGCGTGCGATTCTTCTGAAAATCTATCTGGCGAACCTTATGATCCTTATGCCCACATTCGATGTAATATATGTAATGGCATGGAAGATGATAGTCTTATGTTACTTTGTGATGTTTGTGATTCAGCTTCACATACATATTGTGTTGGCTTGGGTACAACTGTTCCTGAAGGTGATTGGTTCTGTCGGTTCTGTGACATAAATGGTAGGAATGCTTCTGCCCGGAGTCAAACTGGTTTGGATGGGGATGATCGGATTTTAGCTACGAGTGTTGAGACTCATCCTAGCATTCGTGATACCGTGAGAGAACCTAACAACCTTAGATTGGGGACAGTAATAGGAAGAGTACCCTCTTGTCCAAACAATAAGGCCACGGCTTTAGTTACTTTGGACAGAAGCAATGTAAGTAACGAAAGTAGAACTTTGCATAGTTGTCGTAATATTCATACACATATAAGAGCTTTACGTGAAAATTGGCATGATTTGCGAAGAGGGTCATTGAGCTTTCGGTCAAGTTCATTAACAGATTGTAGCAATCAGAAAAAGTTGGAGGTGGACCCTTCAACTTCCACCAGTTGTCAGAACGCTGAAAGCTCAAATGAAGAAAGAAGCTTAGGTGATGTTGAGAAGGCTTGGAAGATGATGAAAATTGCCAAGGCAATATGTAAGAGCACGAGCCATGTTAATCCGACCTTGGAAACTCCTGGGAGACAAACTAATCCGAAAAATGCTTGTTCTACGACTTCAAATGCATCAGTTGTTGGAAATCAGCTATACAAACGCAAAGATCTGGTGAGAACTGCTGTAAGAAATCAGGGGCATTGGTCTTGGGTGAATGATGAGTTGAAACACCAATCAGTAGTGAAGGATGAGCATAATAGATGTCTAGTTGCAAGGAAGGAGAATTCAGAATCTAATAAAGGAAATCCACCGAGATCATCCTGCTCCTCTGAAAATAAGGACCATCGTGAAAATGGAACAGGATCATCAAGGAATAGTAAATTGAACGTTCATGATGGAAATTGCAGATCGGGAAAAGATGATATTAATATCGAGGGAACCAATATCCCTGATGCCAAAAGTGAGATTCAATCCTTGGTGAAGATCAACTTAAAGCTTCTCAGCAGAGACAAAAGACTAGGAGTCGATACGTTCAAGAAAGCTGCGAGGCTTGCGACCCACACGATCTTAGCAGCATGTGGTTTAGAGCCGTGGAAGCTGAATTCTTACTCGCTTCCAAACTCGATTTGCAATCACGAAAAAGATATTCAGCAGAGGCTTCGGAAAGTGTCGTTAATGCCAAATTGCTGTGTAGAATGCTTTTATGTAGTTGTGCAGGATATTGTCAAGACTGCCATGGAAGAGACTAGTAAAGGAAATAAACATTAG 1710 41.99 MAVDLDSLSPSPNKRLKTLATTSTFNFPFNVNSRANKLENSSQICVICLSEDGKADAGQLNCCDHYFCFVCIVEWGKIESKCPSCKRRFSTICRLSIDGSRRRVVKIPACDSSENLSGEPYDPYAHIRCNICNGMEDDSLMLLCDVCDSASHTYCVGLGTTVPEGDWFCRFCDINGRNASARSQTGLDGDDRILATSVETHPSIRDTVREPNNLRLGTVIGRVPSCPNNKATALVTLDRSNVSNESRTLHSCRNIHTHIRALRENWHDLRRGSLSFRSSSLTDCSNQKKLEVDPSTSTSCQNAESSNEERSLGDVEKAWKMMKIAKAICKSTSHVNPTLETPGRQTNPKNACSTTSNASVVGNQLYKRKDLVRTAVRNQGHWSWVNDELKHQSVVKDEHNRCLVARKENSESNKGNPPRSSCSSENKDHRENGTGSSRNSKLNVHDGNCRSGKDDINIEGTNIPDAKSEIQSLVKINLKLLSRDKRLGVDTFKKAARLATHTILAACGLEPWKLNSYSLPNSICNHEKDIQQRLRKVSLMPNCCVECFYVVVQDIVKTAMEETSKGNKH 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11121688 11124051 - Bpe006455.1 Bpe13g00328 113108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00328 569 MobiDBLite consensus disorder prediction 336 356 - -
Bpe13g00328 569 ProSiteProfiles Zinc finger RING-type profile. 45 86 IPR001841 -
Bpe13g00328 569 MobiDBLite consensus disorder prediction 285 313 - -
Bpe13g00328 569 PANTHER F18C1.6 PROTEIN 8 565 - -
Bpe13g00328 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Bpe13g00328 569 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Bpe13g00328 569 Pfam Zinc finger, C3HC4 type (RING finger) 45 85 IPR018957 GO:0046872
Bpe13g00328 569 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 8 565 - -
Bpe13g00328 569 SMART PHD_3 128 173 IPR001965 -
Bpe13g00328 569 SUPERFAMILY RING/U-box 35 92 - -
Bpe13g00328 569 MobiDBLite consensus disorder prediction 285 308 - -
Bpe13g00328 569 MobiDBLite consensus disorder prediction 405 448 - -
Bpe13g00328 569 SMART ring_2 129 172 IPR001841 -
Bpe13g00328 569 SMART ring_2 45 85 IPR001841 -
Bpe13g00328 569 ProSiteProfiles Zinc finger PHD-type profile. 126 175 IPR019787 -
Bpe13g00328 569 Pfam PHD-finger 128 173 IPR019787 -
Bpe13g00328 569 SUPERFAMILY FYVE/PHD zinc finger 115 172 IPR011011 -
Bpe13g00328 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 92 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00328 - - - jre:108993487 345.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01202 Bpe-Chr11:8948427 Bpe13g00328 Bpe-Chr13:11121688 5.13E-07 dispersed
Bpe11g01400 Bpe-Chr11:10446309 Bpe13g00328 Bpe-Chr13:11121688 1.65E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22272 PF00628 PHD 1.70E-10 CL0390 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00328 Bpe_Chr13 FPKM 100.643524 111.364876 11.090175 11.062129 23.657133 21.087492 27.118908 5.126107 4.961925 5.860941