Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00336 ATGGCGGAAGTGGAAGATAGGCCTCACGTTTCTTCGAAGGAAGAAACCAAGAAGAAGCGGAAGAGAAAGAGGCCCGTTAGAGCATTTTTGTCTGCTAATGAAGGAGAATCAGAGATCTGTAATCCAGGTTTGGAAGAAGATGAAGATGGGATTGGTGAGCGATCAGAGAGAGAGAAGAAAAGCGAGAAGAAGAAGTCTAAGGCGGTGGATGCGGTGGGGGAGAAGCCGGATGAGGATGACGACGAGAATCAGAACGAGGATAAGGTAGAAAAAACTGATGATGAAGGGGGAAAGGAGGAGGATAACGGAAAGGAGAAGAAGAAGGTTAAGACTAATGCATCGGGGATTATGACTACTGTGTCTTTTACTTCTCTTGAATTATCTGAACACACTATTAGGGCCATTAAGGATATGGGATTCGAGTATATGACTCAGTTTAAAGTTGCAATTTATTTCAGACCTTATGAGGGAACAGGTATACAATCTAGGGCCGTACCTCCACTATTGCTTGGAAAAGATGTTCTTGGTGCTGCGAGAACTGGTTCAGGGAAAACGCTGGCTTTTCTAATCCCAGCTGTAGAGTTGCTATATCATATACATTTTACTCCACGTAATGGAACAGGCGTTGTTGTAATATGCCCAACTAGGGAACTTGCAATGCAGACTTATGCTGTGGCAAAGGACCTTCTTAAGTATCACTCCCAGACACTTGGCCTTGTTATTGGTGGTAATGCTAGGCGAGGAGAAGCAGAACGAATTGTTAAAGGAGTTAATTTATTAGTGGCAACTCCTGGCCGACTTCTTGACCATCTTCAAAATACCAAGGGTTTTATATATAAAAACCTTAAGTGCCTTATGATTGATGAAGCTGATAGGATACTGGAAGCAAACTTCGAAGAAGAAATGAAGCAAATTATTAAACTCCTTCCCAAGAATAGGCAGACTGCTTTATTTTCTGCCACTCAAACTCAAAAGGTCGAAGATCTTGCTCGCTTGTCATTCCAGACGACTCCTATTTATATTGACGTGGATGATGGACGAACCAAGGTCACAAATGAAGGTCTGCAGCAAGGCTATTGTGTTGTGCCAAGTGCTAAAAGATTTATTCTTCTATATTCCTTCTTGAGAAGGAATTTATCTAAGAAAGTCATGGTCTTCTTTTCCTCTTGTAACTCCGTCAAATTCCACTCAGACCTTCTCAGATATATTCAGGTGGATTGCCTTGATATCCATGGAAAGCAAAAGCAACAAAAGAGGACCACTACTTTCTTTGACTTTTGCAAAGCTGAGAAGGGAATTTTACTGTGTACTGATGATTGGATTGTGCAATATGATCCCCCAGATGAGCCTAAGGAATACATCCATCGAGTTGGTCGAACTGCTCGTGGTGAAGGAGGGAAAGGAAATGCCCTTCTTTTCTTGATTCCAGAGGAGTTGCAATTTCTTCGGTACCTAAAGGCGGCAAAGGTTCCTGTTAAAGAATATGAATTTAGTGAGAAGAAGCTGGCTAATGTTCAGTCTCTCTTGGAGAAGTTGGTGGGCAACAATTACTATTTGAACAAGTCAGCAAAAGATGCTTACAGATCATATCTATTAGCTTACAATTCCCATTCCATGAAAGATATCTTCAATGTCCACCGTCTTGATCTACAGGGTGTGGCTAGTTCGTTCGGCTTTTCCAATCCCCCAAAGATCAATCTCAATATGGACAGCAACGCCTCAAAATTTAGGAAGAAAATGCGCAATGTTGAAGGCAGACGACATGGATTCAGCGAGAGCAACCCTTATGGAAAAAGAAGCGGGGATGATAAGAGACAGTTTGTAAGGTATTAG 1833 41.95 MAEVEDRPHVSSKEETKKKRKRKRPVRAFLSANEGESEICNPGLEEDEDGIGERSEREKKSEKKKSKAVDAVGEKPDEDDDENQNEDKVEKTDDEGGKEEDNGKEKKKVKTNASGIMTTVSFTSLELSEHTIRAIKDMGFEYMTQFKVAIYFRPYEGTGIQSRAVPPLLLGKDVLGAARTGSGKTLAFLIPAVELLYHIHFTPRNGTGVVVICPTRELAMQTYAVAKDLLKYHSQTLGLVIGGNARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLQQGYCVVPSAKRFILLYSFLRRNLSKKVMVFFSSCNSVKFHSDLLRYIQVDCLDIHGKQKQQKRTTTFFDFCKAEKGILLCTDDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYEFSEKKLANVQSLLEKLVGNNYYLNKSAKDAYRSYLLAYNSHSMKDIFNVHRLDLQGVASSFGFSNPPKINLNMDSNASKFRKKMRNVEGRRHGFSESNPYGKRSGDDKRQFVRY 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11222247 11226130 + Bpe006463.1 Bpe13g00336 113116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00336 610 Pfam Domain of unknown function (DUF4217) 505 565 IPR025313 -
Bpe13g00336 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 513 IPR001650 -
Bpe13g00336 610 CDD DEADc_DDX18 131 342 IPR044773 GO:0003724|GO:0005524
Bpe13g00336 610 PANTHER RNA HELICASE 84 600 - -
Bpe13g00336 610 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 286 294 IPR000629 -
Bpe13g00336 610 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 84 600 - -
Bpe13g00336 610 MobiDBLite consensus disorder prediction 581 610 - -
Bpe13g00336 610 Gene3D - 57 344 IPR027417 -
Bpe13g00336 610 SMART DUF4217_3 504 567 IPR025313 -
Bpe13g00336 610 MobiDBLite consensus disorder prediction 1 110 - -
Bpe13g00336 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 342 IPR027417 -
Bpe13g00336 610 Gene3D - 351 584 IPR027417 -
Bpe13g00336 610 SMART helicmild6 394 464 IPR001650 -
Bpe13g00336 610 CDD SF2_C_DEAD 355 474 - -
Bpe13g00336 610 Pfam DEAD/DEAH box helicase 158 329 IPR011545 GO:0003676|GO:0005524
Bpe13g00336 610 Pfam Helicase conserved C-terminal domain 371 463 IPR001650 -
Bpe13g00336 610 SMART ultradead3 153 358 IPR014001 -
Bpe13g00336 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 478 IPR027417 -
Bpe13g00336 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 340 IPR014001 -
Bpe13g00336 610 MobiDBLite consensus disorder prediction 47 74 - -
Bpe13g00336 610 MobiDBLite consensus disorder prediction 89 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00336 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - sind:105164333 862.448
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00180 Bpe-Chr9:1247563 Bpe13g00336 Bpe-Chr13:11222247 7.23E-101 dispersed
Bpe13g00336 Bpe-Chr13:11222247 Bpe08g00440 Bpe-Chr8:2776144 1.71E-56 dispersed
Bpe13g01113 Bpe-Chr13:16746502 Bpe13g00336 Bpe-Chr13:11222247 1.50E-21 dispersed
Bpe13g00336 Bpe-Chr13:11222247 Bpe10g00600 Bpe-Chr10:12901260 2.42E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00336 Bpe_Chr13 FPKM 6.733504 6.941267 6.13134 7.104419 4.067526 4.409514 4.005937 7.523479 7.167664 7.885984