Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00343 ATGGAGCCTGATCGGACACCCCAGGTGAAAGGAGTTGTGATAATCACTCTTCCGCCGGCAGACAATCCCTCCCTGGGCAAAACAATCACTGCATTTACTGTATTGAACTCTGTCCAATTGCAGCAAGGTTTTGACTTACGGCGGGAAGAACAAGAAAATGGCGGAACCCAGAACAATCAATATCCAGTGAATCTTCCGATTCGGTCACCTCCAGAATACCAATTTCGATTATCTTTCGGAAATCTCTTCCATGGCGGTCTGAGAAAGCTCGTCGCGATCGTTGGTGTCAGTCTCTTTGCCGTTATGTTTTACAGTTCTTTGTTTCCGATGACCATTCAGGAATTGCGTAGGTCTAACGATGAAAATGGCCCCAAATCTTTTCTCTTTCCTCTTTACCATAAATTTGATCGCTCAGCAGAGATGGGTGTTCATCTCAAATTAGGAAGATTCGTGGACGTAGATAAGGAAAATGTGATGGTTTTAAATAGAAATTCCCTTAATCCTTCGGAGGTCAACAAATTCGTTTCCTCAGCAGAAAAAGTCGACTCTTCCACCATTTTTCCTGTCAAGGGAAATGTCTATCCAGATGGATTGTATTACACGTACATATTAGTTGGAAATCCTCCACGGCCTTATTTTCTTGACATGGATACTGGAAGTGACTTAACATGGATTCAATGCAATGCGCCATGCACTAGCTGCGCCAAGGGAAGGCATCCATTATATGAACCTAAAAGAAGCAATATAGTGTCACCAAAGCATTCACTATGTATGGAAATTCAGAGAAATCAAAATGGAGGGTATTGTGAAACTTGTCGGCAGTGTGACTATGAGATTCAATATGCAGATGAAAGCTCCTCTTTGGGTGTTCTTACCACAGATGAGCTTCACCTAGTGGTTTCAAATGGATCGTTGAGCAAGTTGAATGTTATTTTTGGGTGTGCTTATGATCAGCAAGGCTTACTTTTAAGCAGTTTATTGAAGACGGATGGCATTCTTGGACTCAGCAGGGCTAAAGTTGGCTTGCTTTCACAATTGGATAACCAGGGGATCATCAACAATGTGTTTGGCCATTGTCTCATCTTCGATGCTGCTGGCGGAGGACATATGTTCATGGGAGATGATTTTGTGCCCCAATGGGGGATGGCATGGGTTCCCATGCTTAATATCCCTTCAATAGATTACTATCATGCAAAGATTACGAAAATATATTACGGAAGCAGCCCTCTAAATGGTGATGGACGAAGCGGCCTAGTTGGACAAGTAGTTTTTGACACGGGAAGCTCTTATACATACTTAACAAAACAAGCCTATTCTGACTTGGTTGCTTCTCTCGACGAAGTATCATTGTTTGGTCTCGTTCAGGACTCGTCAGACTCAACCTTACCCGTTTGTTGGCGAGCAGAATTTCCCATCAGATCTGTATCAGATGTTAAGCGGTTCTTCAAGCCTTTAAACCTCCTGTTTGGAAGCAGATTTTGGATCGTCTCTACTAAGTTCGAGATTCCTCCCGATGGTTATTTAGTCGTTAGTAACAAAGGTAACATTTGTTTGGGAATTCTTGATGGAAGTGCAGTCCTTGATGGATCCAACATTATTCTTGGAGATATCTCACTCAGAGGAAAATTGGTGGTATACGACAATGTGAACCAGAAAATAGGGTGGACTGAGTCTTACTGCCCTAATCCTAAGCCTAGAAAAACTAACAGCCTTCATCTCCCTTTCTTTTTGTAA 1734 42.45 MEPDRTPQVKGVVIITLPPADNPSLGKTITAFTVLNSVQLQQGFDLRREEQENGGTQNNQYPVNLPIRSPPEYQFRLSFGNLFHGGLRKLVAIVGVSLFAVMFYSSLFPMTIQELRRSNDENGPKSFLFPLYHKFDRSAEMGVHLKLGRFVDVDKENVMVLNRNSLNPSEVNKFVSSAEKVDSSTIFPVKGNVYPDGLYYTYILVGNPPRPYFLDMDTGSDLTWIQCNAPCTSCAKGRHPLYEPKRSNIVSPKHSLCMEIQRNQNGGYCETCRQCDYEIQYADESSSLGVLTTDELHLVVSNGSLSKLNVIFGCAYDQQGLLLSSLLKTDGILGLSRAKVGLLSQLDNQGIINNVFGHCLIFDAAGGGHMFMGDDFVPQWGMAWVPMLNIPSIDYYHAKITKIYYGSSPLNGDGRSGLVGQVVFDTGSSYTYLTKQAYSDLVASLDEVSLFGLVQDSSDSTLPVCWRAEFPIRSVSDVKRFFKPLNLLFGSRFWIVSTKFEIPPDGYLVVSNKGNICLGILDGSAVLDGSNIILGDISLRGKLVVYDNVNQKIGWTESYCPNPKPRKTNSLHLPFFL 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11274604 11277780 + Bpe006470.1 Bpe13g00343 113123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00343 577 PANTHER ASPARTYL PROTEASE APCB1 16 564 - -
Bpe13g00343 577 Pfam Xylanase inhibitor N-terminal 199 374 IPR032861 -
Bpe13g00343 577 Gene3D Acid Proteases 379 561 IPR021109 -
Bpe13g00343 577 ProSiteProfiles Peptidase family A1 domain profile. 199 556 IPR033121 -
Bpe13g00343 577 PANTHER ASPARTYL PROTEASES 16 564 IPR001461 GO:0004190|GO:0006508
Bpe13g00343 577 Pfam Xylanase inhibitor C-terminal 419 556 IPR032799 -
Bpe13g00343 577 SUPERFAMILY Acid proteases 191 560 IPR021109 -
Bpe13g00343 577 Gene3D Acid Proteases 174 374 IPR021109 -
Bpe13g00343 577 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 422 433 IPR001969 GO:0004190|GO:0006508
Bpe13g00343 577 PRINTS Pepsin (A1) aspartic protease family signature 205 225 IPR001461 GO:0004190|GO:0006508
Bpe13g00343 577 PRINTS Pepsin (A1) aspartic protease family signature 532 547 IPR001461 GO:0004190|GO:0006508
Bpe13g00343 577 PRINTS Pepsin (A1) aspartic protease family signature 422 433 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00343 - - - mnt:21402903 731.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00276 Bpe-Chr10:10110178 Bpe13g00343 Bpe-Chr13:11274604 3.88E-103 dispersed
Bpe13g00343 Bpe-Chr13:11274604 Bpe11g01271 Bpe-Chr11:9510697 1.14E-34 dispersed
Bpe13g00343 Bpe-Chr13:11274604 Bpe08g00186 Bpe-Chr8:1023363 3.52E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g339 . . . . . Bpe13g00343 Bma06g00033 . Cmo13g01071 . . . . . . Cpe20g00114 . . . . . . . . . . . . . . . Cone2ag0698 . . . Lsi02g00172 Csa01g00655 Chy12g01445 Cme12g01885 . . . . . . . . Sed01g1713 . . Cma13g01031 . Car13g00865 . . . Bhi08g01222 Tan05g2279 Cmetu12g0397 Lac10g0224 Hepe07g2405 . . Cla04g01102 Cam04g1155 Cec01g1665 Cco01g1711 Clacu04g1182 Cmu04g1162 Cre01g1460 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012585 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00343 Bpe_Chr13 FPKM 9.315789 10.858444 13.430202 12.9124 20.446026 22.728016 20.022024 12.862011 14.503939 14.488782