Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00351 ATGGCTTTTACGGCCAAGATTTCGGAGTTTCAGCTGAGGAACTCGTTGTTTGTTACCGCTAACTCGCAGTCTATGTTCTCCTCTCATAAGTTGTCGTTTTCAATTGTCAAGCCTGTTTTTTACGCACGAAAGATTTCAGAGCAAAGTTTTAGCGAAACTTCGAAATCATGGCAGAAATCAAGAGCTTCTCCTGCTCCTTGGCTCTCAAAGTGGCCGTCTGGAGATTCTATGATTGAATTAGGGGATCGTAGAGTCAATGAGAAAGTTGTGAAATCGAAAAGTGAAAGTCGAACGGTTCGAGCGGAAGCTGAGACTGGTTATGTCCGTAAAGACAAGGGACAGAGTGCGATTGATAGAATTGTTTTGCGGTTGCGAAATCTAGGGTTAGGATCGGATGATGAGAATGAAAATGAAGAGGATGATCGAGGAGGTGGAAATGGATTGGAGGATAAGGATGAGGTACCAGTGACTGGGGATGAGAAACTTGGTGAATTATTGCAGCGAGAGTGGATTCGACCTGATAGCATATTGACCAAGGACGATGATGACATGGTATTACCATGGGAGCTAGAGGAGGAAAAAGTCCAAGAGGAGGAAGGAGGGAGGGGGTCAAAGAGAAGGGTGGTGAAAGCTCCAACATTGGCGGAATTAACGATTGAGGATGAGGAACTAAGACGATTAAGAAGAATTGGGATGTTTGTTAGAGAGAGGATCAATGTGCCGAAAGCAGGGCTCACTCGGGAAGTTTTAGAAAAGATTCACGGAAAGTGGAGAAAGGAAGAATTAGTAAGACTCAAGTTTCATGAGGTGCTTGCACATGACATGAAAACAGCGCATGAAATAGTTGAGCGTCGAACAAGGGGACTTGTGATTTGGAAGGCTGGAAGTGTTATGTTAGTGTATCGTGGAAGTAATTATGAAGGGCCACCCAAATCTGAAGCTGTTATAAGAGAAGGCGATTCACTATTCATCCCAGATGTTACTTCTGTTCGTACTCCTATGCTAAGGGATGACAATAGCGTAAATTCAACTCTTGAAAAGACTAAAGTGGATGTTCGATCTATGGATCATCCTCAGAGAATGACAGAAGAAGAGGCCGAGTACAACAGCCTATTAGATAATTTAGGTCCTCGTTTTGATGAATGGTGGGGAACAGGAGTACTTCCAGTTGATGCTGATTTGCTTCCTCCTAAACTACCTTGCTACAAGACACCTTTCAGGCTTCTTCCTACTGGAATGCGATCTCGACTGACCAATGCAGAAATGACTGACTTACGAAAAATTGCTAAGTCACTACCTTGTCATTTTGCCCTTGGGAGAAATCGAAATCATCAGGGTCTGGCTGCTGCTATAGTAAAGCTATGGGAGAAAAGCTTAGTAGCTAAAATTGCTGTTAAAAGGGGTATCCAGAATACCAATAACAAGATAATGGCTGAGGAACTGAAGAATTTAACGGGAGGTGTTTTACTTCTGAGAAATAAATACTTCATCATCATATACCGTGGAAAGGATTTTCTCCCTACAAGTGTGGCCTCTGCTTTAGCAGAAAGAGAAGATTTGACTAAGCAAATTCAAGATGTTGAGGAGAAAGTTCGTAATAAATTAGTGGAGCCATCTTCCTCACATAAAGATGGACAGGTGCTTGCTGGTACATTGGCTGAGTTCTATGAAGCACAAAATCGTTGGGGAAGAGATATATCTGCTGAAGAACGGCAGAAAATGATTGAGGAAGATATAAAAGCTAAAGGTGCAAGGGTTGTCAAACGTATAGAGCATAAACTAGCTGTTGCCCAAGCCAAGAAGCTCAGAGCTGAGAAACTTCTATCTAAAATAGAAGCTTCGATGCTTCCTAGTGGTCCTGATGAAGACCAGGAAACTATCACGGATGAGGAACGGGTTATGTTTAGAAGGGTTGGTTTGAGAATGAAAGCATATTTACCTCTTGGTATCCGAGGTGTATTTGATGGTGTCATTGAAAATATGCATTTGCACTGGAAGCACAGAGAACTTGTGAAACTTATTAGCAAGCAAAAGACACTTGCTTTTGTCGAAGATACAGCTAGGTTATTAGAGTATGAGAGTGGCGGCATATTAGTTGCAATAGAAAGAGTTCCAAAAGGATATGCTTTGATTTATTATCGTGGAAAAAATTATCGGAGACCTGTCAGCTTGAGGCCAAGAAACCTGCTTACGAAGGCAAAAGCATTAAAGCGCTCAGTAGCCATGCAACGCCACGAGGCTCTTAGCCAGCACATAACTGAACTTGAGAAAAATATAGAGCAGATGAAGAAAGAGATTGTAAGTATTAACTTTCCGCTTCTGTACTCTTTTTTTTTTGGTCCATACAGCAAACAAATATGA 2361 41.89 MAFTAKISEFQLRNSLFVTANSQSMFSSHKLSFSIVKPVFYARKISEQSFSETSKSWQKSRASPAPWLSKWPSGDSMIELGDRRVNEKVVKSKSESRTVRAEAETGYVRKDKGQSAIDRIVLRLRNLGLGSDDENENEEDDRGGGNGLEDKDEVPVTGDEKLGELLQREWIRPDSILTKDDDDMVLPWELEEEKVQEEEGGRGSKRRVVKAPTLAELTIEDEELRRLRRIGMFVRERINVPKAGLTREVLEKIHGKWRKEELVRLKFHEVLAHDMKTAHEIVERRTRGLVIWKAGSVMLVYRGSNYEGPPKSEAVIREGDSLFIPDVTSVRTPMLRDDNSVNSTLEKTKVDVRSMDHPQRMTEEEAEYNSLLDNLGPRFDEWWGTGVLPVDADLLPPKLPCYKTPFRLLPTGMRSRLTNAEMTDLRKIAKSLPCHFALGRNRNHQGLAAAIVKLWEKSLVAKIAVKRGIQNTNNKIMAEELKNLTGGVLLLRNKYFIIIYRGKDFLPTSVASALAEREDLTKQIQDVEEKVRNKLVEPSSSHKDGQVLAGTLAEFYEAQNRWGRDISAEERQKMIEEDIKAKGARVVKRIEHKLAVAQAKKLRAEKLLSKIEASMLPSGPDEDQETITDEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEALSQHITELEKNIEQMKKEIVSINFPLLYSFFFGPYSKQI 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11317684 11321686 - Bpe006478.2 Bpe13g00351 113131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00351 786 Coils Coil 745 765 - -
Bpe13g00351 786 SUPERFAMILY YhbY-like 218 310 IPR035920 -
Bpe13g00351 786 ProSiteProfiles CRM domain profile. 625 725 IPR001890 GO:0003723
Bpe13g00351 786 SUPERFAMILY YhbY-like 626 723 IPR035920 -
Bpe13g00351 786 ProSiteProfiles CRM domain profile. 415 512 IPR001890 GO:0003723
Bpe13g00351 786 MobiDBLite consensus disorder prediction 141 156 - -
Bpe13g00351 786 Pfam CRS1 / YhbY (CRM) domain 220 302 IPR001890 GO:0003723
Bpe13g00351 786 Pfam CRS1 / YhbY (CRM) domain 417 501 IPR001890 GO:0003723
Bpe13g00351 786 Pfam CRS1 / YhbY (CRM) domain 628 713 IPR001890 GO:0003723
Bpe13g00351 786 SMART CRS1_YhbY_2 627 714 IPR001890 GO:0003723
Bpe13g00351 786 SMART CRS1_YhbY_2 219 302 IPR001890 GO:0003723
Bpe13g00351 786 SMART CRS1_YhbY_2 417 501 IPR001890 GO:0003723
Bpe13g00351 786 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 4 767 - -
Bpe13g00351 786 MobiDBLite consensus disorder prediction 130 156 - -
Bpe13g00351 786 SUPERFAMILY YhbY-like 417 508 IPR035920 -
Bpe13g00351 786 ProSiteProfiles CRM domain profile. 217 313 IPR001890 GO:0003723
Bpe13g00351 786 Coils Coil 510 537 - -
Bpe13g00351 786 Coils Coil 587 607 - -
Bpe13g00351 786 Gene3D - 626 729 IPR035920 -
Bpe13g00351 786 Gene3D - 217 313 IPR035920 -
Bpe13g00351 786 Gene3D - 416 510 IPR035920 -
Bpe13g00351 786 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 4 767 IPR045278 GO:0000375|GO:0003729
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00351 - - - csv:101219948 1048.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00336 Bpe-Chr8:1988061 Bpe13g00351 Bpe-Chr13:11317684 2.51E-163 dispersed
Bpe13g00351 Bpe-Chr13:11317684 Bpe13g00808 Bpe-Chr13:14420591 3.78E-124 dispersed
Bpe14g00908 Bpe-Chr14:6775268 Bpe13g00351 Bpe-Chr13:11317684 2.13E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00351 Bpe_Chr13 FPKM 1.098291 2.110428 50.762547 53.421852 483.69455 367.403687 517.12085 3.555507 3.007179 4.413448