Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00354 ATGGAATTTTTCACTGGTCTCCGTTCTCGCTTGGAGAAAAGACTTCTCGGAGCCGGAAACTTGCCCGATGGTGACAAAGCCGATGAAAACGTTGATTCCTCTGGTTTGTTCTTTGAGCTTCACACCCTGCAAATAGCCACGAATTTCTTCTCCGATTTGAATAAGCTCGGCCATGGAGGTTTCGGTCCGGTATACAAGGGGTTGATGCCAAATGGCCAAGAAGTTGCTGTCAAAAAGCTGTCGCTAGAATCAAGGCAGGGAGTGAAAGAGTTCATTAACGAAGTGACACTATTACTGAAAATTCAGCACAAGAACTTGGTCACATTATTTGGTTGCTGTGTTGAAGGACCTGAGAAGATGCTTATTTACGAGTATCTACCAAACAAAAGCCTTGATTATTTTCTTTTTGATAAAGGAAAATCTTCATCCTTGGATTGGAGAACACGATCCGGGATAGTCACGGGTATTGTACAAGGTCTTGTGTACTTACACGAAGAGGCCCCAATGCGAATTATTCACCGAGACATTAAAGCCGGTAACATATTGCTCGACGAGCAAATGAATCCAAAAATCGCTGATTTCGGCTTGGCCAGACTCTTTCCAGAGGATGATACTCATGTTAATACATTTAGAATTGCTGGTACTCATGGTTATATGGCCCCTGAATATGCGATGTTAGGATATCTGTCTGTAAAAACAGATGTTTTCAGTTTTGGTATCTTGGTTCTGGAAATTGTTTGTGGAAGACAGAACTCTGGTCAGAAGCTTGATGCCGCCAAAGCCGACCTCTTGAGCTATGCATGGTCTGTATATGAAGGAGGCAACCCATTGGATTTGGTGGATCCGACCCTTGTGACGTTCAATCCCACGGAAGCAGCCATGTACATTCAACTCGGATTGTTATGTTGTCAAGCAAGTGTATCCGACCGGCCAGATATGAGCCGTGTCCATCTCATGCTTTCGAGCAACTATTCCAGCTTACCAAGACCCAAAAAACCTGGATTAAGAGGTCGGCGAGGGCAGTGGACTCCTGGCTCTACAGCTGACGCTATCAGGGGATCTTCTCGCAGTAGTTTTGTTGACGAATATAGTAGAAATTCGATCTCTCTTTCTTTCATTGATGAAGGAAAAAAGGGCCTAAAATGCAATTACTAG 1155 43.98 MEFFTGLRSRLEKRLLGAGNLPDGDKADENVDSSGLFFELHTLQIATNFFSDLNKLGHGGFGPVYKGLMPNGQEVAVKKLSLESRQGVKEFINEVTLLLKIQHKNLVTLFGCCVEGPEKMLIYEYLPNKSLDYFLFDKGKSSSLDWRTRSGIVTGIVQGLVYLHEEAPMRIIHRDIKAGNILLDEQMNPKIADFGLARLFPEDDTHVNTFRIAGTHGYMAPEYAMLGYLSVKTDVFSFGILVLEIVCGRQNSGQKLDAAKADLLSYAWSVYEGGNPLDLVDPTLVTFNPTEAAMYIQLGLLCCQASVSDRPDMSRVHLMLSSNYSSLPRPKKPGLRGRRGQWTPGSTADAIRGSSRSSFVDEYSRNSISLSFIDEGKKGLKCNY 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11331503 11334578 - Bpe006481.2 Bpe13g00354 113134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00354 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Bpe13g00354 384 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 19 374 - -
Bpe13g00354 384 Gene3D Phosphorylase Kinase; domain 1 24 125 - -
Bpe13g00354 384 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 374 - -
Bpe13g00354 384 SMART serkin_6 50 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00354 384 Gene3D Transferase(Phosphotransferase) domain 1 126 329 - -
Bpe13g00354 384 CDD STKc_IRAK 56 320 - -
Bpe13g00354 384 Pfam Protein kinase domain 51 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00354 384 ProSiteProfiles Protein kinase domain profile. 50 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00354 384 MobiDBLite consensus disorder prediction 327 350 - -
Bpe13g00354 384 SUPERFAMILY Protein kinase-like (PK-like) 34 320 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00018 Bpe-Chr3:218792 Bpe13g00354 Bpe-Chr13:11331503 5.80E-113 dispersed
Bpe13g00354 Bpe-Chr13:11331503 Bpe01g00367 Bpe-Chr1:2310414 3.92E-101 dispersed
Bpe13g00354 Bpe-Chr13:11331503 Bpe08g00331 Bpe-Chr8:1970054 1.36E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63657 PF00069 Pkinase 5.10E-45 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00354 - - qlo:115963976 529.635