Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00357 ATGGAGAAAAGGAAGAGAGAGCTGAAGTTGAAGAAGAAGCTCGAGCTCATGGCTGTCGCTCCTGAAAGATCATCCAAATTGCTCCATAATTTTTCTTTTCCGCACCTTAAATGGGGCTCTCAGAAATTTCTCAGGTGCATGAAATTTTCCTCCGACTCCGACCAGCGATCTTCACTCCCGGATTCAAAATTCCACGAGTTCGCGATCGAAACCTTTAATAACCAATCCAATGTCATTCCTGATGATTCCGCTGTTCGCGATCGCCGAAACGCCATGGCTGATTTCAAAGCTGGAGGCGAGGATGTTTCGGCTTCAGTAGCGGCGGTGAGGCCGTGGAATTTGAGGACAAGAAGAGCTGCCTGTAAGGCTCCTCATGAAGAGAAGAAGAAGAAGACTGAATTAAGCTCGTTGCCTTTCAGTTGTGAGAAGGAGAAGCCGATCGAGCTACCGAAAATTTCAATTTCACTATCGAAGCAAGAGGTGGAAGAGGATTTCGCCGCCATGGTCGGGACGAGGCCGCCTAGGAGACCCAAAAAGAGGCCAAAGATAGTGCAGAAGCATTTGGATTCAATCTTTCCTGGTTTGTGTCTGACAGAAGTTACAGTAGATTCATACAGAGTTAGAGATAATCCAGATTCTTGA 642 46.73 MEKRKRELKLKKKLELMAVAPERSSKLLHNFSFPHLKWGSQKFLRCMKFSSDSDQRSSLPDSKFHEFAIETFNNQSNVIPDDSAVRDRRNAMADFKAGGEDVSASVAAVRPWNLRTRRAACKAPHEEKKKKTELSSLPFSCEKEKPIELPKISISLSKQEVEEDFAAMVGTRPPRRPKKRPKIVQKHLDSIFPGLCLTEVTVDSYRVRDNPDS 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11353868 11354625 - Bpe006484.1 Bpe13g00357 113137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00357 213 PANTHER PUTATIVE (DUF1639)-RELATED 18 209 - -
Bpe13g00357 213 PANTHER OS01G0688600 PROTEIN 18 209 - -
Bpe13g00357 213 Pfam Protein of unknown function (DUF1639) 156 205 IPR012438 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00357 - - - vvi:100259406 159.458
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00357 Bpe-Chr13:11353868 Bpe13g01301 Bpe-Chr13:18150735 5.33E-27 dispersed
Bpe13g00357 Bpe-Chr13:11353868 Bpe11g00956 Bpe-Chr11:7102622 1.20E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g300 . . . . . Bpe13g00357 . . . . Cma10g00304 Cma11g00283 Car10g00289 Car11g00257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00325 Cmo11g00286 . . . . . . . . . . . . . . . . . . . . Lsi06g01321 . . Cme02g01730
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011010 1 1 0 1 1 1 2 1 1 0 1 0 2 1 1 2 0 1 2 0 0 1 1 1 1 1 1 2 1 3 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00357 Bpe_Chr13 FPKM 18.223434 18.349834 14.820647 16.175819 20.531324 18.299072 20.334944 14.418187 12.347665 14.498161