Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00359 ATGAAAATAGACGCTCTGGATTATCGTGTTCTCAGCATCGACAAATTCGCTCACACAATGAATATTGCGAGGTCAGATTTGTACGACAGTCCTTGCACGGAAAATTTCTCGAACACGTCCTTGAATTCTCTCTTGAATTATTCCCCTAATATCCAGAATCTGACAGTCTTCTACAAATGCCATAGTGAATTACTCAAATCGAACAAAACTCTCTCCACAAACAGATTCGATTGTGCCTCCTATGGCGGCGGGACAGATAACTACTTCTTTGCTAATGAGTCGATAATAGAGACATGGAAATCCGAACTCAGAAATTGCGAAAAAATAATTACAGTTCCGGCGTTGTCAGAGGATCTGGACGAAATCGAGAATGGAACGGGAGTTACCACGAATGCTTTTCATGGCGGTTTTCCGGTGACGTACGACACACTGAACATTACCTCAGCCTGTAACGTTTGTGAGAATTCGGGTGGGTCATGCGGGTCGAACAGTTCGTTTTCATTCCTCTGCTCTTGCCCGGGTCAAATTCCTAATCCTTTTATCATTGTATGTGTTTGCTCTGGTGTTGGGGGTATACTTATGATGTGCCTTGTCTTTTTTATCTGGGAATACCGCAAGAATAAAAAATCATTTGACTCAGCTACTGCATTTAGAAGCCTTTCCTCCTATTTCTCCTCGAAAAACCCAGTTGAGAAGGAAGGTATATATGTTGGTGTTCATCTATTTTCATACACGGAACTTGAAGCAGCTACCAACAAATTTGACTCCGCTAAAGAACTCGGAGATGGAGGCTTCGGTACCGTATATTATGGGAAACTTCAGGATGGGCGAGCTGTAGCGGTCAAGCGCTTGTATGAAAATAATTACAAGAGAGTCGAGCAGTTCAGGAATGAAGTAGAAATTCTCAGTCGCCTACGCCATAAGAATCTTGTTTCTTTATACGGGTGTACATCTCGACAGTGTCGTGAACTCCTGCTTGTTTATGAATACATCTCCAATGGCACAGTGGCCGACCATCTTCACGGCGAAAGAGCGAAACCAGGTTGTGAGCTTCCATGGTCGACTCGGATGAAAATTGCCATAGAAACTGCAAGTGCATTGGTCTATCTCCATGCTTCCGATGTCATTCATCGTGACATTAAAACGAGCAATATTCTCCTCGACAACAATTACAATGTTAAAGTTGCAGATTTTGGACTATCTCGTCCTTTCCCAAATGATGTTTCGCATATTTCAACTGCTCCGCAAGGAACTCCCGGCTATCTTGATCCGGAGTACAACAAATGTTACCAGTTAACGGAAAAGAGTGATGTTTACAGCTTCGGAGTCGTCTTAGTGGAACTTATATCGTCCAAGCCTGCTGTAGATATCACAAGACATCGACAGGAGATTAAGTTATCAACCATGGCTATTAATAAGATCCAGAATAGTGCATTAAATGAGCTTGTTGATCCTCATCTCGGGTTTGAAACAGACGAAACAGTTAGAAAAATGATCCATGCTGTGGCAGAGTTGGCATTTCAGTGTTTGCAGAGTGTGAAGGACACAAGGCCATCCATGGCTGATATTCTTCAGACTTTGAATCGCATAGAGAATGAAGATTGCTGGAAAGAGAAAGCAGGGGATATTAATGTCGACGCAAGCGAAGAATTGCCGAAGCACATTTACGAGAATTCCTCACCCAATTCTGTTATGGTTCGATGGCTTAGCAGGTCTACAACACCACCAAATATCAGCAGTTAA 1743 42.74 MKIDALDYRVLSIDKFAHTMNIARSDLYDSPCTENFSNTSLNSLLNYSPNIQNLTVFYKCHSELLKSNKTLSTNRFDCASYGGGTDNYFFANESIIETWKSELRNCEKIITVPALSEDLDEIENGTGVTTNAFHGGFPVTYDTLNITSACNVCENSGGSCGSNSSFSFLCSCPGQIPNPFIIVCVCSGVGGILMMCLVFFIWEYRKNKKSFDSATAFRSLSSYFSSKNPVEKEGIYVGVHLFSYTELEAATNKFDSAKELGDGGFGTVYYGKLQDGRAVAVKRLYENNYKRVEQFRNEVEILSRLRHKNLVSLYGCTSRQCRELLLVYEYISNGTVADHLHGERAKPGCELPWSTRMKIAIETASALVYLHASDVIHRDIKTSNILLDNNYNVKVADFGLSRPFPNDVSHISTAPQGTPGYLDPEYNKCYQLTEKSDVYSFGVVLVELISSKPAVDITRHRQEIKLSTMAINKIQNSALNELVDPHLGFETDETVRKMIHAVAELAFQCLQSVKDTRPSMADILQTLNRIENEDCWKEKAGDINVDASEELPKHIYENSSPNSVMVRWLSRSTTPPNISS 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11362735 11365698 - Bpe006486.1 Bpe13g00359 113139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00359 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672|GO:0006468
Bpe13g00359 580 Pfam Wall-associated receptor kinase C-terminal 85 174 IPR032872 -
Bpe13g00359 580 ProSiteProfiles Protein kinase domain profile. 254 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00359 580 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 6 570 - -
Bpe13g00359 580 Gene3D Phosphorylase Kinase; domain 1 224 330 - -
Bpe13g00359 580 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Bpe13g00359 580 Gene3D Transferase(Phosphotransferase) domain 1 331 550 - -
Bpe13g00359 580 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 570 IPR044652 -
Bpe13g00359 580 CDD STKc_IRAK 260 530 - -
Bpe13g00359 580 SMART serkin_6 254 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00359 580 Pfam Protein kinase domain 256 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe13g00359 580 SUPERFAMILY Protein kinase-like (PK-like) 235 539 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00359 - - - tcc:18604172 588.571
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00359 Bpe15g00530 CCT
Bpe13g00359 Bpe15g00530 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00359 Bpe-Chr13:11362735 Bpe12g00086 Bpe-Chr12:630635 1.92E-74 dispersed
Bpe05g01058 Bpe-Chr5:23088544 Bpe13g00359 Bpe-Chr13:11362735 1.26E-37 transposed
Bpe13g00359 Bpe-Chr13:11362735 Bpe15g00530 Bpe-Chr15:16458801 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000799 2 5 1 3 2 2 3 4 2 2 2 2 4 3 3 4 2 1 3 2 3 1 2 3 1 3 1 1 3 3 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63658 PF00069 Pkinase 8.00E-50 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00359 Bpe_Chr13 FPKM 11.81148 12.424639 14.198739 15.146074 8.108325 8.714108 8.711675 22.300587 24.203587 24.618687