Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00366 ATGGACAAAATGATCTCCACTGCGTCAGGAGAGGTCATCATTACTAACGACGGCGCGACGATTCTCAACAAAATGGAGGTTCTTCAACCCGCTGCGAAAATGCTCGTCGAACTCTCCAAGTCTCAGGACGCCGCTGCTGGAGATGGAACCACTACCGTTGTTGTTATTGCTGGTGCTCTTCTGAAACAATGCCTTATTCTTCTGTCTCATGGGATTCATCCTACTGTGATCTCCGATTCTCTCCATAAGGCTGCTATAAAGGCTGTCGATGTGTTGACGGCCATGGCGGTTCCAGTTGAGCTATCTGACAGAGAATCTCTGATTAAGTCCGCGAGTACTTCGCTCAATAGTAAGGTTGTTAGTCAGTATTCCACTCTGCTTGCTCCTCTTGCTGTAGATTCCGTCCTCACTGTTGTGGACCCTGAGAAGCCAGATTTGGTTGATTTGAGGGATATAAAGATTGTGAAGAAACTTGGTGGTACTGTAGATGATACGGAGCTAGTAAAGGGTTTGGTTTTTGACAAGAAGGTTAGTCATGCTGCTGGGGGACCAACCAGAATGGAAAATGCGAAGATTGCTGTGATTCAATTCCAGATTTCTCCACCAAAAACTGATATCGAGCAGAGCATTGTTGTCTCAGATTATACTCAGATGGATAGGATATTGAAGGAGGAGAGAAATTATATCTTGGGTATGATTAAGAAGATTAGGGCAACTGGATGTAATGTGTTATTGATTCAAAAGAGCATTTTGAGAGATGCGGTGACAGATCTATCACTGCATTACCTTGCAAAAGCAAAGATATTGGTGATTAAAGATGTTGAGCGAGATGATATTGAGTTCATTACCAAGACGCTCAACTGCTTACCCATAGCAAACATTGAGCATTTCCGGGCTGAGAAGTTGGGTTATGCTGATCTTGTTGAAGAGGTTTCACTTGGAGATGGGAAGATTGTGAAAATTACGGGGATTAAAGATATGGGAAGGACAACAACTGTGGTTGTTCGTGGGTCAAATCAGTTGGTAATAGACGAGGCTGACCGTAGCTTGCACGATGCATTGTGCGTTGTTAGGTGCTTGGTGAATAAAAGATTTTTGATTGCTGGTGGTGGTGCACCAGAAATTGAGCTGTCTAGGCAGCTAGGGGCATGGGCAAAGGTGCTACATGGGATGGAAGGTTATTGTGTCCGCGCATTTGCCGAGGCTCTAGAAGTTATTCCATATACACTGGCTGAAAATGCGGGATTGAACCCAATTTCAATTGTGACGGAGCTGAGGAATCGTCATGCACAGGGTGAGATCAATGCTGGGATCAATGTGAGGAAGGGTCAGATCACAAACATTTTGGAAGAGAATGTGGTGCAGCCACTACTGGTGAGCACTAGTGCTATCACCCTTGCCTCGGAGTGTGTGCGAATGATCTTGAAGATTGATGACATTGTCACGGTGAGGTAG 1455 44.95 MDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSHGIHPTVISDSLHKAAIKAVDVLTAMAVPVELSDRESLIKSASTSLNSKVVSQYSTLLAPLAVDSVLTVVDPEKPDLVDLRDIKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIRATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDDIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKITGIKDMGRTTTVVVRGSNQLVIDEADRSLHDALCVVRCLVNKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPISIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLASECVRMILKIDDIVTVR 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11423975 11425429 - Bpe006492.1 Bpe13g00366 113146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00366 484 PRINTS Tailless complex polypeptide 1 (chaperone) signature 332 354 IPR017998 GO:0140662
Bpe13g00366 484 PRINTS Tailless complex polypeptide 1 (chaperone) signature 12 30 IPR017998 GO:0140662
Bpe13g00366 484 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 61 IPR017998 GO:0140662
Bpe13g00366 484 PRINTS Tailless complex polypeptide 1 (chaperone) signature 366 378 IPR017998 GO:0140662
Bpe13g00366 484 PANTHER CHAPERONIN 1 482 IPR017998 GO:0140662
Bpe13g00366 484 CDD TCP1_delta 1 483 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bpe13g00366 484 Gene3D GroEL 169 328 IPR027409 -
Bpe13g00366 484 SUPERFAMILY GroEL equatorial domain-like 1 482 IPR027413 -
Bpe13g00366 484 Gene3D - 1 481 IPR027413 -
Bpe13g00366 484 SUPERFAMILY GroEL apical domain-like 164 337 IPR027409 -
Bpe13g00366 484 SUPERFAMILY GroEL-intermediate domain like 103 363 IPR027410 -
Bpe13g00366 484 Pfam TCP-1/cpn60 chaperonin family 1 482 IPR002423 GO:0005524
Bpe13g00366 484 Gene3D - 98 364 IPR027410 -
Bpe13g00366 484 ProSitePatterns Chaperonins TCP-1 signature 3. 42 50 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bpe13g00366 484 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT DELTA 1 482 - -
Bpe13g00366 484 TIGRFAM chap_CCT_delta: T-complex protein 1, delta subunit 1 483 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00366 K09496 CCT4; T-complex protein 1 subunit delta - pvy:116105957 895.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00366 Bpe15g00534 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01304 Bpe-Chr3:31518520 Bpe13g00366 Bpe-Chr13:11423975 5.46E-50 dispersed
Bpe10g00789 Bpe-Chr10:14047584 Bpe13g00366 Bpe-Chr13:11423975 1.18E-79 dispersed
Bpe11g01812 Bpe-Chr11:14500392 Bpe13g00366 Bpe-Chr13:11423975 3.25E-88 dispersed
Bpe13g00366 Bpe-Chr13:11423975 Bpe14g01010 Bpe-Chr14:7495246 3.67E-69 dispersed
Bpe13g00366 Bpe-Chr13:11423975 Bpe15g00534 Bpe-Chr15:16493274 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g262 Blo04g00835 Blo16g00127 . . . Bpe13g00366 Bma06g00054 . Cmo13g01041 . . . . . . Cpe20g00139 . . . . . . . . . . . . . . . . . . . Lsi02g00217 Csa01g00699 Chy12g01413 Cme12g01847 . . Bda11g01779 . . Bpe15g00534 . . Sed02g0902 . . . Cma18g00056 . . Cpe09g01125 . Bhi08g01269 Tan05g2218 Cmetu05g1284 Lac10g0271 Hepe07g2368 . . Cla04g01064 Cam04g1107 Cec01g1621 Cco01g1668 Clacu04g1132 Cmu04g1116 Cre01g1417 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008900 2 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00366 Bpe_Chr13 FPKM 16.717585 17.137737 11.121952 10.970773 35.376705 27.392164 35.755653 3.545531 3.434192 3.548094