Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00367 ATGGATATTGAAGAGGAGATTCGTGCGCTACAGCTTGACTCGGCAGACGACAATAATGGGATCATAAATCCCGAAGAGGCAAGGGCAGAAGTTGAGAAATCTGATGATATGGAGGAAGATTTGATAGATCACGGCCCTGCCAAATCAATTGATTCTCATCCTACACCTGTGCAAGGAAAAGTGAAAGAGGACTTCCCTGCTGAAGAAAAGGAAATCTCTCATCCGGAAGAAGAGTTAAATGAGGCAATGGAGTTGGATAAAAAGAAACACTTAAATGTTGTCTTTATTGGTCATGTTGATGCTGGTAAATCCACTATTGGAGGTCAAATACTCTTTCTTAGTGGTAAGGTAGACGACCGTACAATCCAAAAGTATGAAAGAGAAGCAAAAGAGAAAAGCAGAGAGAGCTGGTATATGGCCTATATCATGGACACCAACGAGGAGGAGAGAGTGAAGGGGAAAACTGTGGAAGTTGGAAGAGCCTGTTTTGAAACAGCATCTACAAGATTTACAATTCTTGATGCTCCAGGTCACAAAAGTTATGTTCCAAATATGATCAGTGGCGCATCTCAGGCTGATATTGGAGTGCTGGTAATTTCTGCTCGCAAAGGAGAATTTGAAACTGGATATGAGAGGGGTGGACAGACCCGTGAACATGTTCTTCTTGCAAAAACATTGGGCGTGTCTAAGCTGCTTGTTGTAGTTAATAAGATGGATGATCCAACTGTGAATTGGTCGAAAGAAAGGTATGATGAAATAGAATCCAAGATGGTTCCCTTTCTTAGGTCGTCAGGCTACAATGTGAAGAAAGATGTCCAATTCCTACCGATATCTGGTCTGCTTGGATCAAACATGGAAACAAGAATTGATAAAAAAACATGTCTATGGTGGGATGGTCCCTGCTTGTTTGAAGTTCTTGATGTAATTGAAGGCCCTGTAAGAGATCCGAAAGGTCCATTTAGGATGCCTATAATTGACAAATTTAAAGACATGGGAACAACGGTGATGGGCAAAGTTGAATCAGGCAGTGTGCGTGAGGGTGATTCTTTGTTGATTATGCCGAACAAGGTTCAAGTAAAAGTTGTTGCTGTATACTGTGATGAAAACAAAGTTTTGCGTGCTGGACCTGGAGAAAATTTACGGGTTAGATTATCTGGTGTTGAGGAAGACGACATATCATCAGGATTTGTCTTGTCAAGTGCTGTGAAACCAATACGAGCTGTTACTGAGTTTGTTGCACAGTTGCAGATTCTTGAATTGCTGGAAAATGCAATTTTTACTGCTGGATATAAAGCAGTCTTGCACATTCATTCTGTTGTTGAGGAATGTGAGATTTTGGAGCTTCTACAACAAATTGATCCAAAGACAAAGAAACCCATCAAGAAGAAAATTCTCTTTGTGAAGAATGGAGCCATCGTTGTGTGCCGAGTCCAGGTGAATAACTTAATATGCATCGAGAAATTTTCCGATTTTGCACAGCTTGGAAGATTCACTCTTCGCACCGAAGGAAAGACAGTTGCAGTGGGAAAGGTCACTGATCTTGCATCTTCAAGTGCTTAG 1560 41.22 MDIEEEIRALQLDSADDNNGIINPEEARAEVEKSDDMEEDLIDHGPAKSIDSHPTPVQGKVKEDFPAEEKEISHPEEELNEAMELDKKKHLNVVFIGHVDAGKSTIGGQILFLSGKVDDRTIQKYEREAKEKSRESWYMAYIMDTNEEERVKGKTVEVGRACFETASTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVSKLLVVVNKMDDPTVNWSKERYDEIESKMVPFLRSSGYNVKKDVQFLPISGLLGSNMETRIDKKTCLWWDGPCLFEVLDVIEGPVRDPKGPFRMPIIDKFKDMGTTVMGKVESGSVREGDSLLIMPNKVQVKVVAVYCDENKVLRAGPGENLRVRLSGVEEDDISSGFVLSSAVKPIRAVTEFVAQLQILELLENAIFTAGYKAVLHIHSVVEECEILELLQQIDPKTKKPIKKKILFVKNGAIVVCRVQVNNLICIEKFSDFAQLGRFTLRTEGKTVAVGKVTDLASSSA 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11427618 11435452 - Bpe006493.1 Bpe13g00367 113147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00367 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 323 IPR027417 -
Bpe13g00367 519 CDD eRF3_C_III 406 514 - -
Bpe13g00367 519 Pfam Elongation factor Tu C-terminal domain 404 514 IPR004160 -
Bpe13g00367 519 Gene3D Translation factors 317 401 - -
Bpe13g00367 519 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 88 317 IPR000795 GO:0003924|GO:0005525
Bpe13g00367 519 Pfam Elongation factor Tu GTP binding domain 88 300 IPR000795 GO:0003924|GO:0005525
Bpe13g00367 519 PANTHER TRANSLATION FACTOR 80 510 - -
Bpe13g00367 519 CDD eRF3_II 319 400 - -
Bpe13g00367 519 Pfam Elongation factor Tu domain 2 332 398 IPR004161 GO:0005525
Bpe13g00367 519 MobiDBLite consensus disorder prediction 12 59 - -
Bpe13g00367 519 SUPERFAMILY Translation proteins 312 401 IPR009000 -
Bpe13g00367 519 MobiDBLite consensus disorder prediction 26 47 - -
Bpe13g00367 519 Gene3D Translation factors 406 515 - -
Bpe13g00367 519 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 409 514 IPR009001 -
Bpe13g00367 519 CDD EF1_alpha 92 313 - -
Bpe13g00367 519 Gene3D - 69 311 IPR027417 -
Bpe13g00367 519 PANTHER BNAA06G12300D PROTEIN 80 510 - -
Bpe13g00367 519 PRINTS GTP-binding elongation factor signature 92 105 IPR000795 GO:0003924|GO:0005525
Bpe13g00367 519 PRINTS GTP-binding elongation factor signature 171 181 IPR000795 GO:0003924|GO:0005525
Bpe13g00367 519 PRINTS GTP-binding elongation factor signature 231 240 IPR000795 GO:0003924|GO:0005525
Bpe13g00367 519 PRINTS GTP-binding elongation factor signature 187 198 IPR000795 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00367 K03267 ERF3, GSPT; peptide chain release factor subunit 3 - vvi:100249117 811.601
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00367 Bpe15g00536 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00145 Bpe-Chr8:770039 Bpe13g00367 Bpe-Chr13:11427618 2.49E-93 dispersed
Bpe13g00367 Bpe-Chr13:11427618 Bpe15g01323 Bpe-Chr15:21413315 7.21E-70 dispersed
Bpe13g00367 Bpe-Chr13:11427618 Bpe15g00536 Bpe-Chr15:16501481 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00367 Bpe_Chr13 FPKM 57.712967 62.905067 43.80085 43.448257 139.116013 141.842804 139.667068 21.636253 20.724651 20.520634