Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00379 ATGGCGTCCAATTCCGCTAATCTCTGGGTGTTGCTCGGTCTCGGTTTGGCCGGGATTCTGCTTATGACGAAGAAGCTTAGGAAGACTATCAGAGAAGACTTTGGCGCTTTTATAACGAAGCTTCAGTTGCTTCCTCCTCCTCCGCCTGCTCCTCCTAAAGCTCCTCATCCACTTTCCGGCCTCACCTTTGCAGTTTCCGACGTATTCGAAATTGAAGGACATGCTACTGGTTTTGGCCATCCTGACTGGGAAAGAACACATGATGTGTCTTTGCATACATCTCCAGTTGTTTCTGCTTTAGTTGAAGGTGGGGCTACTTGCATTGGTAAAACTGTCGTGGATGAATTGTCATTTAGCATTAGTGGTGAAAACAAATATTATGGTACTCCTACGAATCCTGCAGCACCTTCAAGAGTTCCTGGCGGAGCCTCTTGCGGAGCTGCTGTGGCTGTAGCTGCCAAAATTGTTGACTTCTCTTTAGGTGTTGATACTGTTGGTGGAGTGAGAATACCTGCGGGGTTTTGTGGCATAATAGGATTTCGTCCTTCTCATGGATCTGTTCCTCATGTGGGAATTATACCTATTTCATCGAGCCTTGACACCATGGGATGGTTTGCTAGGGATCCTATTGTTCTTCTTCGTGTTGGCCATGTTCTATTGAACCTTCCATATGCTGTCCAACGCAGTCCCAGGCAAATAATATTTGCTGATGATTGTTTTCAACTACTTAAGTTACCTGTTGAAAGAGTTGCTCAAGTGGTCATAAAATCAACTGAGAAGCTTTTTGGAAGACAAGTAACAAAGCATCAGAATATGGAAGATTATTTAAACTCCAAGATTCCCAGTTTGAAAGAGTTTATCAATAAAAATGCAAATGGTGGATTGAGAACTTCCACTCTCAGATTCTTGGCAAAACTCGTGCAGAATCTTCAAAGGCACGAGTTCAAACAAAATCATAGTGAATGGATTAACTCGGCGAAACCTGTACTTAGTCCTTCCATCTCAGCACAAATATATGAAACACCAAATGCTGAGAATGCAGAGATTGAGCTGTGGAAATCAGTCAGAAATGAAATGCGATCTGCTATCAATTCTCTCTTGAAGGATGACGGAGTTCTTGTCATTCCTACCACTGCAGATCCTCCTCCAAAAGTTGGTGGAAAGGACCTACTGTCAGAAGAGTTCCAGAATCGGACACTAAGTCTAACGAGTATTGCAAGTGTTTCAGGTTGTTGTCAGGTGACTTTACCATTGGGATTTTATGAAAAAACTCCCATTTCTGTGTCCTTCATAGCGAGGCATGGGGCTGATCGCCTTCTATTAGATATTGTACAGACCTTGTATGCATCCTTACAAGATGAAGTTGAAGTTGCTGCCAAATCCAAACCTTTGAGGAATGCTGTCAGCCAGGAGGAATCTGCTGAAATGGCTAAAGAAAAGGGAAATCAAGCGTACAAGGATAAACAGTGGGAAAAGGCAGTTGGATTTTATACTGAAGCTATCAAATTGAATGGAAGAAATGCAACCTATTATAGTAATAGGGCTGCTGCATATTTGGAACTTGGGCGTTTCCCTCAAGCTGAGACAGATTGCACCAAAGCCATTGAACTAGATAAAAAGAATGTCAAGGCCTTTTTACGAAGAGGCACGGCTAGGGAATTGCTTGGCTATTATAAGGAGGCAATTGAAGATTTTAGCTACGCACTTGTGCTTGAACCAACAAATAAACGAGCATCTACTTCGGCTGATAGATTAAGAAAGCTATTTTCATAG 1773 42.53 MASNSANLWVLLGLGLAGILLMTKKLRKTIREDFGAFITKLQLLPPPPPAPPKAPHPLSGLTFAVSDVFEIEGHATGFGHPDWERTHDVSLHTSPVVSALVEGGATCIGKTVVDELSFSISGENKYYGTPTNPAAPSRVPGGASCGAAVAVAAKIVDFSLGVDTVGGVRIPAGFCGIIGFRPSHGSVPHVGIIPISSSLDTMGWFARDPIVLLRVGHVLLNLPYAVQRSPRQIIFADDCFQLLKLPVERVAQVVIKSTEKLFGRQVTKHQNMEDYLNSKIPSLKEFINKNANGGLRTSTLRFLAKLVQNLQRHEFKQNHSEWINSAKPVLSPSISAQIYETPNAENAEIELWKSVRNEMRSAINSLLKDDGVLVIPTTADPPPKVGGKDLLSEEFQNRTLSLTSIASVSGCCQVTLPLGFYEKTPISVSFIARHGADRLLLDIVQTLYASLQDEVEVAAKSKPLRNAVSQEESAEMAKEKGNQAYKDKQWEKAVGFYTEAIKLNGRNATYYSNRAAAYLELGRFPQAETDCTKAIELDKKNVKAFLRRGTARELLGYYKEAIEDFSYALVLEPTNKRASTSADRLRKLFS 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11535706 11550693 - Bpe006503.1 Bpe13g00379 113159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00379 590 ProSiteProfiles TPR repeat profile. 508 541 IPR019734 GO:0005515
Bpe13g00379 590 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 1 589 - -
Bpe13g00379 590 Gene3D Amidase signature (AS) domain 49 451 IPR036928 -
Bpe13g00379 590 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515
Bpe13g00379 590 Pfam Amidase 55 208 IPR023631 -
Bpe13g00379 590 Pfam Amidase 303 441 IPR023631 -
Bpe13g00379 590 SUPERFAMILY TPR-like 472 578 IPR011990 GO:0005515
Bpe13g00379 590 SMART tpr_5 542 575 IPR019734 GO:0005515
Bpe13g00379 590 SMART tpr_5 508 541 IPR019734 GO:0005515
Bpe13g00379 590 SMART tpr_5 474 507 IPR019734 GO:0005515
Bpe13g00379 590 PANTHER AMIDASE 1 1 589 - -
Bpe13g00379 590 Pfam Tetratricopeptide repeat 509 541 IPR001440 GO:0005515
Bpe13g00379 590 Gene3D Tetratricopeptide repeat domain 459 573 IPR011990 GO:0005515
Bpe13g00379 590 SUPERFAMILY Amidase signature (AS) enzymes 50 446 IPR036928 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00379 - - - vvi:100244007 870.537
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00379 Bpe15g00544 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00151 Bpe-Chr7:1060728 Bpe13g00379 Bpe-Chr13:11535706 6.86E-09 dispersed
Bpe08g01492 Bpe-Chr8:15618185 Bpe13g00379 Bpe-Chr13:11535706 1.93E-12 dispersed
Bpe13g00379 Bpe-Chr13:11535706 Bpe07g00512 Bpe-Chr7:10550872 1.30E-14 dispersed
Bpe05g00237 Bpe-Chr5:14761711 Bpe13g00379 Bpe-Chr13:11535706 1.03E-132 transposed
Bpe05g00447 Bpe-Chr5:18857388 Bpe13g00379 Bpe-Chr13:11535706 1.58E-13 transposed
Bpe06g00271 Bpe-Chr6:13636308 Bpe13g00379 Bpe-Chr13:11535706 4.45E-19 transposed
Bpe07g00463 Bpe-Chr7:7181939 Bpe13g00379 Bpe-Chr13:11535706 3.13E-13 transposed
Bpe09g00560 Bpe-Chr9:14400490 Bpe13g00379 Bpe-Chr13:11535706 3.10E-19 transposed
Bpe12g00328 Bpe-Chr12:7202367 Bpe13g00379 Bpe-Chr13:11535706 0 transposed
Bpe15g00824 Bpe-Chr15:18334320 Bpe13g00379 Bpe-Chr13:11535706 2.27E-08 transposed
Bpe13g00379 Bpe-Chr13:11535706 Bpe15g00508 Bpe-Chr15:16302338 4.06E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42