Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00389 ATGATGAAGTGGGAAAACCCAAAAGAATTTCATTCCGGCCCTTATCGGCCACTGCGAGAAGACGTTTCACGGATGGAGGAACCTCAAAATGGCACTGGGGACGGTGGGGTTTTGTACTTGAAGGTGATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCTCCATCTGCGAGCAGCTCGTGGAGATGCATAAAACCTTAACTTCCCAGCAGGATCCTTCAGCTACTATTGTAATTTGTTACTCTCTTATTTTATTTCCAGGAATCAGGCTTGGTAGTTTATATTGTGAGCCATTAATGGCTTCTTCTGGCCCCAAAATCACTTCAAGACAGCGATGGAATCCAACCCCTGTTCAGCTTCAGATTCTTGAGCGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGCAGAAAATAAAAGAGATAACATCCGAATTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTACAATTGGTTCCAGAACAGGCGAGCTCGATCAAAGAGGAAACAACAAACTTCAACCCCAGTTAATGCTGAATCAGAAGCTGAGACTGATAATGAATCGCCTAATGAAAATGAGATGGAACGAATGGATTTTCAAGTCAAACAGAACAACTCCACATCCGTGGCCGATGATCTGAGATTCCAGATCACTGAGAGCGGCTCTGATTTTCCTTTTTTAGGTGGAAGAACCAACAAAGCAGAGATTTTGTTTCCCTCCAATGGAACCATGAAAAATGGGAGAAATTTGGGTCAAAAATCATTTTATGAGGGTGATGAACATCTGATAGGAAAACTGGAAATGATGGAGAACTACAGTTTGTATCAGCAATCTGAAGAATACAGCATGACAGGGTGA 879 42.78 MMKWENPKEFHSGPYRPLREDVSRMEEPQNGTGDGGVLYLKVMTDEQLETLRKQIAVYASICEQLVEMHKTLTSQQDPSATIVICYSLILFPGIRLGSLYCEPLMASSGPKITSRQRWNPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQQTSTPVNAESEAETDNESPNENEMERMDFQVKQNNSTSVADDLRFQITESGSDFPFLGGRTNKAEILFPSNGTMKNGRNLGQKSFYEGDEHLIGKLEMMENYSLYQQSEEYSMTG 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11643208 11644921 + Bpe006513.1 Bpe13g00389 113169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00389 292 SMART HOX_1 113 180 IPR001356 GO:0003677
Bpe13g00389 292 PANTHER - 2 291 - -
Bpe13g00389 292 ProSiteProfiles 'Homeobox' domain profile. 111 176 IPR001356 GO:0003677
Bpe13g00389 292 Gene3D - 117 182 - -
Bpe13g00389 292 MobiDBLite consensus disorder prediction 170 199 - -
Bpe13g00389 292 CDD homeodomain 115 177 IPR001356 GO:0003677
Bpe13g00389 292 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 291 IPR044559 GO:0003700
Bpe13g00389 292 SUPERFAMILY Homeodomain-like 113 179 IPR009057 -
Bpe13g00389 292 Pfam Homeodomain 115 175 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00389 - - - csv:101203410 340.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01065 Bpe-Chr3:29894718 Bpe13g00389 Bpe-Chr13:11643208 2.75E-06 dispersed
Bpe13g00389 Bpe-Chr13:11643208 Bpe12g00698 Bpe-Chr12:12544701 5.67E-14 dispersed
Bpe13g00389 Bpe-Chr13:11643208 Bpe02g00305 Bpe-Chr2:2008735 3.14E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1199 . Blo16g00107 . . . Bpe13g00389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00075 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22277 PF00046 Homeodomain 2.00E-18 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00389 Bpe_Chr13 FPKM 0.0 0.0 0.0 0.081849 0.703702 0.0 0.0 3.501818 3.680268 3.341597