Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00392 TCCCACATTGACACTTCAAAATGGAAAAAATTAGATGCTAGAATCTTTGGGATACATCGTGGGATGATTTCATCTCCAACTTTGACTGTCTTAAGAGTTCTTCGTGATAAAGGCTTTGAAGTCTACTTGGTTGGTGGATGCGTCCGTGACTTAATCCTGCATAAAGTACCCAAAGACTTTGACGTGATCACTTCGGCAGGACTGAAACAGATCCAGAAGCTATTTCATCGAGCACAAACTGTTGGACGGCGTTTTCCTATTTGTAGGGTGCATATTAAAGATTCTGTTGTTGAGGTTTCAAGTTTTCAAACAGTGGCAAAATTGAAAAATTCAAAAGAGAAAGATATTGTTACACGACCTCAAATGACGAGAGGCTGCAGTGAAAGAGACTTGAAGCTCTGGAGTAACTCCATGTGCCGGGACTTCACAATTAACAGCAGTTTATTCTTTGATCCTTTGATCAACATCATCTATGATTATGCTGACGGAATGGCCGACATAAAGGCTTTAAAGCTAAGGACTATAACTCCTGCTCCATTGTCATTTGAAGAGGATTGTGCAAGAATGCTAAGGGGCATAAGAATTGCGGCTCGTTTGGGGTTGTCATTTGCAAGCCACACTGAAAAGACCATGCATAAACTTTCTTTTTCCATTAAGAGTTTGTCCAAGGCCAGGTTAATGATGGAATTGAACTATATGTTGTCCTATGGAGCTGCGGAGTCCTCTATCTGTTTGCTTCAGAGGTTCAACATCCTTGAAATACTCCTACCACATCATGTACGTTGCTGTCATCTACTAGATCATCTGTTAAGTACATGCTTTTATAAATTGTTCTTCAATTTGGATAAAGTTGTTTCGTGTGATCGACCTTCGGACTGCAATATGTGGTTGGGACTGTTGGCTTTTCATCTGGCATTAGTAAACAACCCTCAAGATGCTCTTTATGTTCGTGCTTTTGCGGCTGTACTCTATCATGGGACGTGGGAAGAAGGTGTAAAATTTGCAAGAGAAAATCCTCAAGTGGAAGTTAACTTTGATCCTGAAATTACAACATCCTCTCACTTTAAATCAGATGAAGATCTTGCTAAAGGGATTCTAAAGATTGCTTCTTTAGTTCAAGATTTTATTTTTGCTTTCTCTGAGACAGATTCTTCTGAGTTGTTAACCGGCCATCCTTTTTTGGTAAGAAATATATTTGTATTTTTATCAAAAAAAGCAGCTAAAAATGTGGCAGAAATTTTCAGAGTGCTACTGGTTGATGTTGAATTGTACAAGTCGGGAAGAAAGAGTTTTGCGATTGACTACCATTTGTTAGGTAAGGGCGACCTTTCAGAGGCCAGATTTGTTATGGGAAAAGTCATCTTGGAGACTATTTGTGGCGGAATTGTTCAGCAGGAGCCAAAGGTCCTTTTGGAGAATTATGGCAGGAGAAATGGGGAAGTTACAAATATGGCACTTTCTGATCCTATGATCCATCAAATGGGGGAGAAACATTATGGAAAAAGGGCCCCACCGCCTCATGCACTAAATGAAAAAATGGTTAAGAAACAGAAGAAGGACAATCATCATGGGCAGGAAATTGCTAGAAAGAGAGAAACTATTGTTCAAAACTGGAAGTACGGCAACAGAGTAGTAGAGGGAGAGAGAAAAATACTAAAATGCAGGGGCCGCGCAGAAGAAGCAGAGGGTACTAAGAAGAAGCAAGACACTCTTGAAAATGAGAGAATCTGTGTTAAATCTAAGAGTGAAAGGACGCACCGAGTGTCGCCAAGAAAAACTACGAAGAAGCAGCTAGAAGTAGGAAAGAGTAGTATCAGCCAGGTGGAGGAGGGAAAAACGCAGCAGGCTGTGTTGGAGAAGAAAAGGGAAGCCAATGGTGAAGTAGGAAAGCACAAGCAAACCAATCCCCTATCCAGCCTCTTTAAATGA 1929 40.64 SHIDTSKWKKLDARIFGIHRGMISSPTLTVLRVLRDKGFEVYLVGGCVRDLILHKVPKDFDVITSAGLKQIQKLFHRAQTVGRRFPICRVHIKDSVVEVSSFQTVAKLKNSKEKDIVTRPQMTRGCSERDLKLWSNSMCRDFTINSSLFFDPLINIIYDYADGMADIKALKLRTITPAPLSFEEDCARMLRGIRIAARLGLSFASHTEKTMHKLSFSIKSLSKARLMMELNYMLSYGAAESSICLLQRFNILEILLPHHVRCCHLLDHLLSTCFYKLFFNLDKVVSCDRPSDCNMWLGLLAFHLALVNNPQDALYVRAFAAVLYHGTWEEGVKFARENPQVEVNFDPEITTSSHFKSDEDLAKGILKIASLVQDFIFAFSETDSSELLTGHPFLVRNIFVFLSKKAAKNVAEIFRVLLVDVELYKSGRKSFAIDYHLLGKGDLSEARFVMGKVILETICGGIVQQEPKVLLENYGRRNGEVTNMALSDPMIHQMGEKHYGKRAPPPHALNEKMVKKQKKDNHHGQEIARKRETIVQNWKYGNRVVEGERKILKCRGRAEEAEGTKKKQDTLENERICVKSKSERTHRVSPRKTTKKQLEVGKSSISQVEEGKTQQAVLEKKREANGEVGKHKQTNPLSSLFK 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11674047 11680767 + Bpe006516.1 Bpe13g00392 113172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00392 642 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 2 642 - -
Bpe13g00392 642 CDD NT_ClassII-CCAase 28 169 IPR002646 GO:0003723|GO:0006396|GO:0016779
Bpe13g00392 642 Gene3D - 174 338 - -
Bpe13g00392 642 Gene3D Beta Polymerase, domain 2 23 173 IPR043519 -
Bpe13g00392 642 Pfam Poly A polymerase head domain 41 173 IPR002646 GO:0003723|GO:0006396|GO:0016779
Bpe13g00392 642 Pfam Probable RNA and SrmB- binding site of polymerase A 200 259 IPR032828 -
Bpe13g00392 642 MobiDBLite consensus disorder prediction 614 629 - -
Bpe13g00392 642 MobiDBLite consensus disorder prediction 581 642 - -
Bpe13g00392 642 SUPERFAMILY Poly A polymerase C-terminal region-like 171 305 - -
Bpe13g00392 642 SUPERFAMILY Nucleotidyltransferase 16 168 IPR043519 -
Bpe13g00392 642 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 2 642 - -
Bpe13g00392 642 MobiDBLite consensus disorder prediction 599 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00392 - - - jre:109014131 571.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00392 Bpe-Chr13:11674047 Bpe14g00810 Bpe-Chr14:6112653 6.95E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1182 . Blo16g00104 . . . Bpe13g00392 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1700 Cone9ag1623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01062 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00392 Bpe_Chr13 FPKM 8.753181 10.536713 14.719697 13.690817 23.620443 22.22505 24.924164 33.101147 35.493759 37.501167