Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe13g00399 | ATGGATTTTACTGCGTATTCGTCTCGGATTTCCTCGTCGTCGTCTTCTCTGTTTGCTAATTCTGTCGAGAGAGTCAAGGAAACCTGCTGCTACGCGGCTACCGCCATTATTGGGAATATTTTCTCGGCGATCTTCACATTTTCCTTCGCGCTAGTGGGCACCCTATTAGGAGCCATGACCGGAGCATTGATTGGGCAGGAGACAGAGAGTGGATTCGTCAGAGGTGCGGCCATCGGAGCAATCTCCGGCGCTGTTTTCTCCATCGAAGTCTTTGAATCTTCTGTCGTTCTTTGGAAGTCTGATGAATCTGGCATAGTCTGTCTTCTTCTCTACCTGATTGATGTCATTTCAAGCCTCATAAGCGGGAGACTCGTTCGAGAGCGTATCGGTCCGGCGATATTTAGCGCGGTTCAAAGTCAGATTGGTGTCGGAGAGTTGAGTTTTGAGGACTTGCCTAACATATTCGACACGAGCAGCACTAAAGGGCTGGCCGGAGACTCCGTCGAGAAAATTCCGAAGATCACAATTTCAGAGAACAATGACTTGGATGCTTCTGGATATAAAGTTTCTTGCTCAGTTTGCCTCCAGGATTTCCAAGTAGGAGAGACGGTGAGAAGTTTACCTCAATGCCATCACATGTTTCACTTACCCTGCATAGACAAATGGCTTCTCAAACACGGTTCTTGCCCATTATGCAGAAGGGATCTC | 708 | 47.88 | MDFTAYSSRISSSSSSLFANSVERVKETCCYAATAIIGNIFSAIFTFSFALVGTLLGAMTGALIGQETESGFVRGAAIGAISGAVFSIEVFESSVVLWKSDESGIVCLLLYLIDVISSLISGRLVRERIGPAIFSAVQSQIGVGELSFEDLPNIFDTSSTKGLAGDSVEKIPKITISENNDLDASGYKVSCSVCLQDFQVGETVRSLPQCHHMFHLPCIDKWLLKHGSCPLCRRDL | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 11727019 | 11728774 | + | Bpe024940 | Bpe13g00399 | 113179 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe13g00399 | 236 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 9 | 236 | - | - | |
Bpe13g00399 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 191 | 233 | IPR001841 | - | |
Bpe13g00399 | 236 | Pfam | YMGG-like Gly-zipper | 49 | 85 | IPR027367 | - | |
Bpe13g00399 | 236 | Pfam | Ring finger domain | 190 | 233 | IPR001841 | - | |
Bpe13g00399 | 236 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 9 | 236 | IPR044523 | - | |
Bpe13g00399 | 236 | SMART | ring_2 | 191 | 232 | IPR001841 | - | |
Bpe13g00399 | 236 | CDD | RING-H2_PA-TM-RING | 191 | 233 | - | - | |
Bpe13g00399 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 236 | IPR013083 | - | |
Bpe13g00399 | 236 | SUPERFAMILY | RING/U-box | 190 | 236 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe06g00140 | Bpe-Chr6:2509541 | Bpe13g00399 | Bpe-Chr13:11727019 | 1.92E-119 | dispersed | |
Bpe13g00399 | Bpe-Chr13:11727019 | Bpe02g00297 | Bpe-Chr2:1974887 | 7.67E-18 | dispersed | |
Bpe13g00399 | Bpe-Chr13:11727019 | Bpe07g00772 | Bpe-Chr7:14216080 | 2.28E-32 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe13g00399 | - | - | csv:101220376 | 368.622 |