Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00399 ATGGATTTTACTGCGTATTCGTCTCGGATTTCCTCGTCGTCGTCTTCTCTGTTTGCTAATTCTGTCGAGAGAGTCAAGGAAACCTGCTGCTACGCGGCTACCGCCATTATTGGGAATATTTTCTCGGCGATCTTCACATTTTCCTTCGCGCTAGTGGGCACCCTATTAGGAGCCATGACCGGAGCATTGATTGGGCAGGAGACAGAGAGTGGATTCGTCAGAGGTGCGGCCATCGGAGCAATCTCCGGCGCTGTTTTCTCCATCGAAGTCTTTGAATCTTCTGTCGTTCTTTGGAAGTCTGATGAATCTGGCATAGTCTGTCTTCTTCTCTACCTGATTGATGTCATTTCAAGCCTCATAAGCGGGAGACTCGTTCGAGAGCGTATCGGTCCGGCGATATTTAGCGCGGTTCAAAGTCAGATTGGTGTCGGAGAGTTGAGTTTTGAGGACTTGCCTAACATATTCGACACGAGCAGCACTAAAGGGCTGGCCGGAGACTCCGTCGAGAAAATTCCGAAGATCACAATTTCAGAGAACAATGACTTGGATGCTTCTGGATATAAAGTTTCTTGCTCAGTTTGCCTCCAGGATTTCCAAGTAGGAGAGACGGTGAGAAGTTTACCTCAATGCCATCACATGTTTCACTTACCCTGCATAGACAAATGGCTTCTCAAACACGGTTCTTGCCCATTATGCAGAAGGGATCTC 708 47.88 MDFTAYSSRISSSSSSLFANSVERVKETCCYAATAIIGNIFSAIFTFSFALVGTLLGAMTGALIGQETESGFVRGAAIGAISGAVFSIEVFESSVVLWKSDESGIVCLLLYLIDVISSLISGRLVRERIGPAIFSAVQSQIGVGELSFEDLPNIFDTSSTKGLAGDSVEKIPKITISENNDLDASGYKVSCSVCLQDFQVGETVRSLPQCHHMFHLPCIDKWLLKHGSCPLCRRDL 236
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 11727019 11728774 + Bpe024940 Bpe13g00399 113179
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00399 236 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 9 236 - -
Bpe13g00399 236 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
Bpe13g00399 236 Pfam YMGG-like Gly-zipper 49 85 IPR027367 -
Bpe13g00399 236 Pfam Ring finger domain 190 233 IPR001841 -
Bpe13g00399 236 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 9 236 IPR044523 -
Bpe13g00399 236 SMART ring_2 191 232 IPR001841 -
Bpe13g00399 236 CDD RING-H2_PA-TM-RING 191 233 - -
Bpe13g00399 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 236 IPR013083 -
Bpe13g00399 236 SUPERFAMILY RING/U-box 190 236 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00140 Bpe-Chr6:2509541 Bpe13g00399 Bpe-Chr13:11727019 1.92E-119 dispersed
Bpe13g00399 Bpe-Chr13:11727019 Bpe02g00297 Bpe-Chr2:1974887 7.67E-18 dispersed
Bpe13g00399 Bpe-Chr13:11727019 Bpe07g00772 Bpe-Chr7:14216080 2.28E-32 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00399 - - csv:101220376 368.622