Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00405 ATGTCGCGGTGTTTTCCATACCCGCCACCTGCGTACGTAAAGAACGGGATCCGCGATGAAGCCCTGATCGAATTGATCAAGGTTTGTTCGAGCATCCATAAAGAAGCGGAGAAGGCCAAGAAAGAGAAGAGGCGACAGAGGAAACATGAAAAGAAAGTTAGGGAGAGGACAAAAAAAAATGGAGAGGTTGAAATAAAGAAGCATCATAAAAAGAGACAAAGGGATGGTAGGAGCTCCATAGATCAGCAAAGAGGTGATAAAGAAAACACCAGTCAAATAGCAGTTGGTCGTCTTGAGAGAAGTGTCGTAACAGAAGAACATGGTCATCCTGTTGGATCCCAGATTTCTACTGATAGTACTTACAACATCAACAAAAGGCTAAAACAACAAAACCCTTCTGTCGATGGAGAAGTGCACAGTCCTGGTGACATTATCAGGATCAAATTGCCCAGCCAAATGCACAAAGATCCAGATGTGCTCCCTAGGGAACAGCCTTGCTCTTCCTGCGAAAGAATGCAGCATGAATCTTCTCCTAGACCCAGCATTGATATGGCCGAACTTTGCTGTTCTACTTCTGCAATTGTCAGTGACGGACTCAGTTTCCGGCCAATTCAACAGAAGTATGGCCCCACTTCTACGGGGGCTGAAGCAACTTCATTGAACGGTTTAGCAGGCGAGTCCTTGGCCGCAGACTTAAAGGATCTGGTTGAAAACTTGTTAGGGCCTCCACTGCCAGAGGAATGGACGGTTCCTGATCTGGGGTGGCTGTTTGATACGAAGCAAAGCAAGAATGGTGCCAATGAAAGATGCAGTATCAGTATAGAAAGAAAGTTTCCGAGACTTGATAGCTCGAATCCATGGCCTTGTGCTCAGTATCTGCCTGATGCTGATGTATATGCTTTGCCATACTCAATCCCCTTCTAA 924 45.78 MSRCFPYPPPAYVKNGIRDEALIELIKVCSSIHKEAEKAKKEKRRQRKHEKKVRERTKKNGEVEIKKHHKKRQRDGRSSIDQQRGDKENTSQIAVGRLERSVVTEEHGHPVGSQISTDSTYNINKRLKQQNPSVDGEVHSPGDIIRIKLPSQMHKDPDVLPREQPCSSCERMQHESSPRPSIDMAELCCSTSAIVSDGLSFRPIQQKYGPTSTGAEATSLNGLAGESLAADLKDLVENLLGPPLPEEWTVPDLGWLFDTKQSKNGANERCSISIERKFPRLDSSNPWPCAQYLPDADVYALPYSIPF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11764961 11767052 + Bpe006529.1 Bpe13g00405 113185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00405 307 Coils Coil 33 56 - -
Bpe13g00405 307 MobiDBLite consensus disorder prediction 35 96 - -
Bpe13g00405 307 MobiDBLite consensus disorder prediction 40 54 - -
Bpe13g00405 307 PANTHER BNAANNG08330D PROTEIN 1 307 - -
Bpe13g00405 307 PANTHER MYB-LIKE PROTEIN X 1 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00405 - - - gra:105787460 219.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01738 Bpe-Chr2:19787089 Bpe13g00405 Bpe-Chr13:11764961 8.61E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1158 . Blo16g00091 . . . Bpe13g00405 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1696 Cone9ag1620 . . . . . . Bda11g01826 . . . . Bma06g00088 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003832 2 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 3 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00405 Bpe_Chr13 FPKM 45.870037 53.453255 19.355089 23.747686 31.675192 31.343597 31.414925 23.957243 25.095739 24.732195