Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00413 ATGGGGGAAGAGAGATTGACTGGTGTGGTACAGTGGTTCAATGACGCCAAGGGATTTGGTTTCATCAAGCCTGTTGGGGATGGTCCAGATCTGTTTGTTCATCAATCGTCGATCCAATCCGATGGCTACCGACGTCTTGTCGAGGGCGAGCAAGTTGAGTTCCAGATCGCTCCTGGCGATGATGGAAAATCTAAAGCCGTAGATGTTATCGGTATTGATGGATCTTCGTTCCAAGGGAACAGGAGGGATGGTTCAGGTGGTGGAAGAGGTGGTCGTGGTGGTGGGTATGGTTTTGGCGGTGGTTGGAGAGGTGACCGCCGAGATAGCGGTGGTGCTGGCTGCTATAGTTGCGGCGATCCAGGGCATTTGGCTAGGGATTGCGGTCGTTCTAATAGCCGTGGAGTTGGCGGTGGGTGCTATTCTTGTGGCGAGGGTGGTCACTTGGCGAGAGATTGCCCTCAAGGCAACGGTGGGAGTGGTGGAGGAGGAGGTGGTGGGGCGGGTTCTTGCTATAATTGTGGTGGCTTTGGACACATGGCGAGGGATTGCAATAAGGGAAGCAGTGGAGGTGGAGGAGCTTGCTTTAAGTGTGGGGAATACGGACACTTGGCTAGGGATTGCGCCAGCGCCAGTGGAAGCAGCAATTTTGGCAGAGGTGGAAGATTTGGTGGAAGTGGTGGTGCAGGCGGTGGCAGCACCTGCTTCAATTGTGGGAAGGCGGGACACTTTGCAAGAGATTGTCCTGAAGCATATTAA 756 54.1 MGEERLTGVVQWFNDAKGFGFIKPVGDGPDLFVHQSSIQSDGYRRLVEGEQVEFQIAPGDDGKSKAVDVIGIDGSSFQGNRRDGSGGGRGGRGGGYGFGGGWRGDRRDSGGAGCYSCGDPGHLARDCGRSNSRGVGGGCYSCGEGGHLARDCPQGNGGSGGGGGGGAGSCYNCGGFGHMARDCNKGSSGGGGACFKCGEYGHLARDCASASGSSNFGRGGRFGGSGGAGGGSTCFNCGKAGHFARDCPEAY 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11820036 11820791 - Bpe006538.2 Bpe13g00413 113193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00413 251 Gene3D - 190 215 - -
Bpe13g00413 251 Gene3D - 228 250 - -
Bpe13g00413 251 Gene3D - 103 132 - -
Bpe13g00413 251 Gene3D - 133 161 - -
Bpe13g00413 251 Gene3D - 165 189 - -
Bpe13g00413 251 ProSiteProfiles Zinc finger CCHC-type profile. 194 207 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 SMART csp_8 7 72 IPR011129 GO:0003676
Bpe13g00413 251 SMART c2hcfinal6 193 209 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 SMART c2hcfinal6 233 249 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 3 187 - -
Bpe13g00413 251 PANTHER COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE 135 250 - -
Bpe13g00413 251 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 187 - -
Bpe13g00413 251 PANTHER COLD SHOCK DOMAIN PROTEIN 2 135 250 - -
Bpe13g00413 251 SUPERFAMILY Retrovirus zinc finger-like domains 106 155 IPR036875 GO:0003676|GO:0008270
Bpe13g00413 251 ProSiteProfiles Zinc finger CCHC-type profile. 170 183 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 MobiDBLite consensus disorder prediction 74 94 - -
Bpe13g00413 251 SUPERFAMILY Nucleic acid-binding proteins 4 72 IPR012340 -
Bpe13g00413 251 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Bpe13g00413 251 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Bpe13g00413 251 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Bpe13g00413 251 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Bpe13g00413 251 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 CDD CSP_CDS 7 69 IPR002059 GO:0003676
Bpe13g00413 251 Pfam Zinc knuckle 233 249 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 Pfam Zinc knuckle 113 127 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 Pfam Zinc knuckle 169 184 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 Pfam Zinc knuckle 193 208 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 Pfam Zinc knuckle 138 154 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 ProSiteProfiles Zinc finger CCHC-type profile. 234 249 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 Gene3D - 2 83 IPR012340 -
Bpe13g00413 251 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Bpe13g00413 251 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Bpe13g00413 251 ProSiteProfiles Zinc finger CCHC-type profile. 139 154 IPR001878 GO:0003676|GO:0008270
Bpe13g00413 251 SUPERFAMILY Retrovirus zinc finger-like domains 219 249 IPR036875 GO:0003676|GO:0008270
Bpe13g00413 251 SUPERFAMILY Retrovirus zinc finger-like domains 162 209 IPR036875 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00413 K09250 CNBP; cellular nucleic acid-binding protein - csv:101216334 286.189
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00413 Bpe15g00473 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01630 Bpe-Chr2:19135885 Bpe13g00413 Bpe-Chr13:11820036 4.79E-09 dispersed
Bpe12g00094 Bpe-Chr12:682010 Bpe13g00413 Bpe-Chr13:11820036 3.19E-06 dispersed
Bpe13g00413 Bpe-Chr13:11820036 Bpe14g00375 Bpe-Chr14:3550585 4.24E-07 dispersed
Bpe03g00286 Bpe-Chr3:3924281 Bpe13g00413 Bpe-Chr13:11820036 4.63E-06 transposed
Bpe13g00413 Bpe-Chr13:11820036 Bpe15g00473 Bpe-Chr15:16077605 5.74E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1119 Blo04g00883 . . . Bpe15g00473 Bpe13g00413 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0853 Cone12ag0714 Cone6ag1686 . . . . . . . Bda11g01834 . . . Bma03g00959 Bma06g00094 . . . Cma16g01239 . . . . . . . . . . . . . . . . . . . Lsi07g01102 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006925 2 0 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22280 PF00313 CSD 1.90E-22 CL0021 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00413 Bpe_Chr13 FPKM 18.670952 19.287539 17.60541 16.527397 29.912792 28.80332 31.294725 17.319138 15.485481 18.546333