Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00414 ATGGCGGCTGCTGTTACTGCTGCTGTCTCTTTCCCTTCCTCCAAGTCCGCCTCTCTTCCCACCAGAACCTCTATTGCCTCACCGGAAAGAATCGCCTTCAAAAGGGTAAGATCGCACGATGTCTCCGCCAGTGCGAGAGTGGTTTCCATCAAAGCTCAGGTTACCACTGAGGCTCCGGTTAAGGTTGAGAAGGAGTCTAAGAAAATGGAGGAAGGAGTGATCGTTAACAAATTCAAGCCGAAGAATCCATACACAGGAAGATGCCTTCTAAACACTAAGATTACAGGCGACGACGCTCCTGGAGAAACTTGGCACATGGTTTTCAGCACAGAAGGAGAAGTTCCATATAGAGAAGGACAATCGATAGGGGTGATTGCTGATGGTGTAGACAAGAATGGGAAGCCTCACAAATTGAGATTGTACTCCATTGCTAGCAGTGCCCTTGGTGACTTTGGAGACTCCAAAACTGTTTCTCTATGCGTGAAACGCCTTGTTTACACCAATGACCAAGGAGAAATTGTCAAAGGAGTCTGCTCAAACTTCTTATGTGATCTAAAGCCTGGAGACGAAGTGAAGATAACCGGCCCCGTTGGCAAAGAAATGCTCATGCCGAAAGATACTAATGCCACCGTAATCATGCTCGGAACCGGAACTGGGATTGCTCCATTCCGATCGTTCTTGTGGAAAATGTTATTTGAGAAGCATGAAGATTACAAGTTCAACGGCCTGGCTTGGCTTTTCTTGGGTGTTCCCACGAGTAGCTCACTGCTCTACAAGGAGGAGTTTGAGAAAATGAAAGAGAAGGCCCCGGACAAATTCAGGCTCGACTTTGCCGTCAGCAGAGAGCAGACGAACGCAAAGGGGGAGAAAATGTACATTCAAACGAGAATGGCAGAATACGCGGAAGAACTGTGGGAATTGCTCAAGAAAGACAACACCTATGTCTACATGTGTGGACTCAAAGGAATGGAGAAAGGAATCGATGATATCATGGTCGACTTGGCTGCCAAAGATGGCTTGGATTGGCTGGAGTACAAGAGGCAATTGAAGAAAGCAGAGCAATGGAACGTGGAAGTCTACTGA 1083 47.18 MAAAVTAAVSFPSSKSASLPTRTSIASPERIAFKRVRSHDVSASARVVSIKAQVTTEAPVKVEKESKKMEEGVIVNKFKPKNPYTGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGDEVKITGPVGKEMLMPKDTNATVIMLGTGTGIAPFRSFLWKMLFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDKFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVDLAAKDGLDWLEYKRQLKKAEQWNVEVY 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11821289 11823281 - Bpe006539.1 Bpe13g00414 113194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00414 360 Pfam Oxidoreductase NAD-binding domain 213 327 IPR001433 GO:0016491
Bpe13g00414 360 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 206 360 IPR039261 -
Bpe13g00414 360 MobiDBLite consensus disorder prediction 1 20 - -
Bpe13g00414 360 PANTHER - 1 360 IPR015701 GO:0016491
Bpe13g00414 360 PIRSF Frd-NADP+_RD 1 360 IPR015701 GO:0016491
Bpe13g00414 360 Pfam Oxidoreductase FAD-binding domain 117 199 IPR008333 -
Bpe13g00414 360 PANTHER FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME 1, CHLOROPLASTIC 1 360 - -
Bpe13g00414 360 SUPERFAMILY Riboflavin synthase domain-like 66 202 IPR017938 -
Bpe13g00414 360 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 81 203 IPR017927 GO:0016491
Bpe13g00414 360 PIRSF FNR-PetH 2 360 IPR035442 GO:0016491
Bpe13g00414 360 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 139 146 IPR001709 GO:0016491
Bpe13g00414 360 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 116 126 IPR001709 GO:0016491
Bpe13g00414 360 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 314 322 IPR001709 GO:0016491
Bpe13g00414 360 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 212 231 IPR001709 GO:0016491
Bpe13g00414 360 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 176 185 IPR001709 GO:0016491
Bpe13g00414 360 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 254 265 IPR001709 GO:0016491
Bpe13g00414 360 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 290 306 IPR001709 GO:0016491
Bpe13g00414 360 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 242 251 IPR001709 GO:0016491
Bpe13g00414 360 CDD CYPOR_like_FNR 76 360 - -
Bpe13g00414 360 Gene3D Translation factors 51 197 - -
Bpe13g00414 360 Gene3D - 198 360 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00414 K02641 petH; ferredoxin--NADP+ reductase [EC:1.18.1.2] - gmx:100802032 654.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00482 Bpe-Chr1:2990406 Bpe13g00414 Bpe-Chr13:11821289 1.60E-94 dispersed
Bpe08g00698 Bpe-Chr8:8114132 Bpe13g00414 Bpe-Chr13:11821289 2.34E-10 dispersed
Bpe13g00414 Bpe-Chr13:11821289 Bpe13g01215 Bpe-Chr13:17490468 1.76E-12 dispersed
Bpe13g00414 Bpe-Chr13:11821289 Bpe02g02085 Bpe-Chr2:22360734 3.26E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1118 . Blo16g00081 . . . Bpe13g00414 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1685 Cone9ag1607 . . . . . . Bda11g01835 . . . . Bma06g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01103 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009581 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00414 Bpe_Chr13 FPKM 7.026529 7.154272 5.277758 5.572954 5.773563 6.661831 4.847948 11.499011 12.424014 11.519383