Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00416 ATGTCGCTCACTGCTCTTGCCGAGGAGAAGACTCTGCAGCAGAAGTTCGTCAGGGACGAAGACGAACGTCCTAAAGTCGCTTACAATGACTTCAGTAATGATGTTCCCGTCATCTCCCTCGCCGGAATCGACGAGGTCGATGGTCGGAGACCCGATATTTGTCGGAAGATTGTGGAGGCCTGTGAGGAATGGGGAGTTTTCCAGGTGATCGATCATGGAGTCGATGTGGAGCTTATTTCCGAAATGACTCGTCTCGCTAGAGAGTTCTTCGCTCTTCCTCCCGAGGAGAAACTCCAGTTCGACATGTCCGGCGGCAAGAAGGGTGGTTTTATCGTCTCCAGCCACCTTCAAGGAGAAGCAGTTCAAGATTGGCGGGAAATTGTGACCTACTTCTCATACCCAATCCAACACCGGGATTACTCGAGATGGCCGGATAAGCCTGAGGGGTGGGTGGAAGTGGCGAAGAAATACAGCGACGATCTGATGGGTTTGGCCTGCAAGCTATTGGAGGTGTTATCGGAGGCGATGGGGTTAGAGAAAGAAGCTCTGACCAAAGCTTGCGTCGATATGGACCAGAAAATGGTAGTTAATTTTTACCCGAAATGCCCCCAACCGGACCTAACGCTCGGACTTAAGCGTCATACCGATCCCGGAACAATCACCCTCTTGCTTCAAGATCATGTCGGCGGGCTTCAGGCCACCCGGGACGACGGCAAATCGTGGATCACTGTTCAGCCTGTCGACGGGGCGTTTGTTGTCAATCTCGGCGATCATGGCCACTATCTTAGCAATGGGAGATTTAGGAACGCTGATCATCAAGCGGTGGTGAACTCCAACTACAGCCGATTGTCAATAGCGACATTCCAGAACCCAGCGCCGGAGGCCATAGTTTACCCACTTTCAGTGAGGGAGGGAGAGAAGCCAATACTGGACGAACCCATAACGTTTGCGGAGATGTACCGGAGGAAGATGACCAAGGATCTGGAGCTTGCCAGGCTGAAGAAGCTTGCCAATGAAGAGGAAGCAAAACAACAGCTCGATAAAGCTAACCTTGAAGCCAAATCTACAGTTTAG 1074 51.68 MSLTALAEEKTLQQKFVRDEDERPKVAYNDFSNDVPVISLAGIDEVDGRRPDICRKIVEACEEWGVFQVIDHGVDVELISEMTRLAREFFALPPEEKLQFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPIQHRDYSRWPDKPEGWVEVAKKYSDDLMGLACKLLEVLSEAMGLEKEALTKACVDMDQKMVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDHVGGLQATRDDGKSWITVQPVDGAFVVNLGDHGHYLSNGRFRNADHQAVVNSNYSRLSIATFQNPAPEAIVYPLSVREGEKPILDEPITFAEMYRRKMTKDLELARLKKLANEEEAKQQLDKANLEAKSTV 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11830161 11831665 - Bpe006541.1 Bpe13g00416 113196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00416 357 Coils Coil 334 356 - -
Bpe13g00416 357 SUPERFAMILY Clavaminate synthase-like 7 326 - -
Bpe13g00416 357 Gene3D - 3 330 IPR027443 -
Bpe13g00416 357 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 187 291 IPR005123 -
Bpe13g00416 357 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 352 - -
Bpe13g00416 357 PANTHER NARINGENIN,2-OXOGLUTARATE 3-DIOXYGENASE 5 352 - -
Bpe13g00416 357 Pfam 2OG-Fe(II) oxygenase superfamily 192 290 IPR044861 -
Bpe13g00416 357 Pfam non-haem dioxygenase in morphine synthesis N-terminal 35 145 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00416 K00475 F3H; naringenin 3-dioxygenase [EC:1.14.11.9] - ming:122084606 630.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00315 Bpe-Chr7:2307822 Bpe13g00416 Bpe-Chr13:11830161 0 dispersed
Bpe13g00416 Bpe-Chr13:11830161 Bpe04g00776 Bpe-Chr4:4987101 2.53E-63 dispersed
Bpe13g00416 Bpe-Chr13:11830161 Bpe04g01806 Bpe-Chr4:23495826 8.74E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1111 Blo04g00886 . . . . Bpe13g00416 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01837 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002095 5 1 3 3 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 3 3 1 3 5 1 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00416 Bpe_Chr13 FPKM 3.813183 5.176016 2.732443 2.918537 9.84449 8.978605 9.46105 1.706629 1.951486 1.806686