Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00423 ATGCGGGCGCTTTGCGACTCTTGTGAAAGTGCACCTGCTACTGTATTTTGCGCCGCCGACGAGGCTGCCCTCTGCCGTGCCTGTGACGAGAAGGTAGTCCACTTGTGTAATAAGCTAGCCAGCCGACATATAAGAGTAGGACTAGCGAATCCCAGCGATGTTCCTCAATGCGATATATGCGAAAATGCTCCTGCTTTCTTCTACTGCGAGGTAGATGGCAGTTCCCTTTGTTTGCAATGCGATACAGTTGTTCACGTTGGAGGTAAAAGAACTCATAAAAGATACCTTGTGTTGAGGCAGAGAGTCGAGTTTCCAGGCGATAAACCCGGAAGTTTGGATGATCCAGCACCACCAGCCACCGATGGTGGTGAGACGAAACGGCTACAAAATGAACCGCCCAAAGTTACAGAGGGAGAGAATCGGAAAAATGATGATCATTCTGCTGATCCAAATGATGGTGTTGATGAGCATAATGAGACAGACAGTAAAATGATTGATCTGAATATGAAGCCTCTTTGGATTCCTGGGCAAGCTTCGAATGATCAGGTAAGGTTGCATTGTTTGATCAATTGGTAA 576 46.88 MRALCDSCESAPATVFCAADEAALCRACDEKVVHLCNKLASRHIRVGLANPSDVPQCDICENAPAFFYCEVDGSSLCLQCDTVVHVGGKRTHKRYLVLRQRVEFPGDKPGSLDDPAPPATDGGETKRLQNEPPKVTEGENRKNDDHSADPNDGVDEHNETDSKMIDLNMKPLWIPGQASNDQVRLHCLINW 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11855165 11856343 + Bpe006548.1 Bpe13g00423 113203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00423 191 MobiDBLite consensus disorder prediction 127 162 - -
Bpe13g00423 191 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 183 - -
Bpe13g00423 191 Gene3D Classic Zinc Finger 2 96 - -
Bpe13g00423 191 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Bpe13g00423 191 Pfam B-box zinc finger 54 93 IPR000315 GO:0008270
Bpe13g00423 191 ProSiteProfiles Zinc finger B-box type profile. 52 97 IPR000315 GO:0008270
Bpe13g00423 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Bpe13g00423 191 SMART bboxneu5 52 97 IPR000315 GO:0008270
Bpe13g00423 191 SMART bboxneu5 1 48 IPR000315 GO:0008270
Bpe13g00423 191 CDD Bbox1_BBX-like 4 48 - -
Bpe13g00423 191 MobiDBLite consensus disorder prediction 106 162 - -
Bpe13g00423 191 CDD Bbox1_BBX-like 57 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00423 Bpe-Chr13:11855165 Bpe03g00871 Bpe-Chr3:28466255 5.58E-23 dispersed
Bpe14g00128 Bpe-Chr14:1750730 Bpe13g00423 Bpe-Chr13:11855165 1.11E-17 dispersed
Bpe13g00423 Bpe-Chr13:11855165 Bpe02g00365 Bpe-Chr2:2405816 4.54E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22281 PF00643 zf-B_box 8.00E-08 No_clan Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00423 - - tcc:18610806 275.018