Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00423 ATGCGGGCGCTTTGCGACTCTTGTGAAAGTGCACCTGCTACTGTATTTTGCGCCGCCGACGAGGCTGCCCTCTGCCGTGCCTGTGACGAGAAGGTAGTCCACTTGTGTAATAAGCTAGCCAGCCGACATATAAGAGTAGGACTAGCGAATCCCAGCGATGTTCCTCAATGCGATATATGCGAAAATGCTCCTGCTTTCTTCTACTGCGAGGTAGATGGCAGTTCCCTTTGTTTGCAATGCGATACAGTTGTTCACGTTGGAGGTAAAAGAACTCATAAAAGATACCTTGTGTTGAGGCAGAGAGTCGAGTTTCCAGGCGATAAACCCGGAAGTTTGGATGATCCAGCACCACCAGCCACCGATGGTGGTGAGACGAAACGGCTACAAAATGAACCGCCCAAAGTTACAGAGGGAGAGAATCGGAAAAATGATGATCATTCTGCTGATCCAAATGATGGTGTTGATGAGCATAATGAGACAGACAGTAAAATGATTGATCTGAATATGAAGCCTCTTTGGATTCCTGGGCAAGCTTCGAATGATCAGGTAAGGTTGCATTGTTTGATCAATTGGTAA 576 46.88 MRALCDSCESAPATVFCAADEAALCRACDEKVVHLCNKLASRHIRVGLANPSDVPQCDICENAPAFFYCEVDGSSLCLQCDTVVHVGGKRTHKRYLVLRQRVEFPGDKPGSLDDPAPPATDGGETKRLQNEPPKVTEGENRKNDDHSADPNDGVDEHNETDSKMIDLNMKPLWIPGQASNDQVRLHCLINW 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11855165 11856343 + Bpe006548.1 Bpe13g00423 113203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00423 191 MobiDBLite consensus disorder prediction 127 162 - -
Bpe13g00423 191 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 183 - -
Bpe13g00423 191 Gene3D Classic Zinc Finger 2 96 - -
Bpe13g00423 191 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Bpe13g00423 191 Pfam B-box zinc finger 54 93 IPR000315 GO:0008270
Bpe13g00423 191 ProSiteProfiles Zinc finger B-box type profile. 52 97 IPR000315 GO:0008270
Bpe13g00423 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Bpe13g00423 191 SMART bboxneu5 52 97 IPR000315 GO:0008270
Bpe13g00423 191 SMART bboxneu5 1 48 IPR000315 GO:0008270
Bpe13g00423 191 CDD Bbox1_BBX-like 4 48 - -
Bpe13g00423 191 MobiDBLite consensus disorder prediction 106 162 - -
Bpe13g00423 191 CDD Bbox1_BBX-like 57 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00423 - - - tcc:18610806 275.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00423 Bpe-Chr13:11855165 Bpe03g00871 Bpe-Chr3:28466255 5.58E-23 dispersed
Bpe14g00128 Bpe-Chr14:1750730 Bpe13g00423 Bpe-Chr13:11855165 1.11E-17 dispersed
Bpe13g00423 Bpe-Chr13:11855165 Bpe02g00365 Bpe-Chr2:2405816 4.54E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1083 Blo04g00894 Blo16g00074 . Bda10g00172 . Bpe13g00423 . Bma15g00960 Cmo04g00794 . Cma03g00703 Cma07g00442 Car03g00645 Car07g00389 . Cpe19g00845 Cpe10g00649 Bhi03g00888 . . . . . . Cla01g01962 Cam01g2052 Cec04g1710 Cco04g1775 Clacu01g2073 Cmu01g1950 Cre04g1625 . . Cone6ag1668 Cone9ag1590 Lsi01g00620 . . Cme08g00909 . Blo06g00321 Bda11g01843 . . . . Bma06g00103 . Cmo03g00728 Cmo07g00440 . . . . . . . . . . . . . . . . . . . . . Csa06g03304 Chy02g00591 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00128 . 23 396 C2C2-CO-like Transcription Factor Family AT5G15850 51.5 2.2e-58 223.0
Bpe14g00128 . 25 396 C2C2-CO-like Transcription Factor Family AT3G02380 53.7 8.9e-65 244.2
Bpe02g01272 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 53.4 5.1e-63 238.4
Bpe13g01202 BCT 4 347 C2C2-CO-like Transcription Factor Family AT5G57660 54.4 1.4e-65 246.9
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 6.1e-80 294.7
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 51.5 7.5e-78 287.7
Bpe07g00668 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 51.5 7.5e-78 287.7
Bpe07g00449 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 55.8 3.7e-52 202.2
Bpe15g00849 BCT 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 8.2e-52 201.1
Bpe05g00323 BCT 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 1.5e-50 196.8
Bpe13g00423 . 1 113 C2C2-CO-like Transcription Factor Family AT2G21320 80.5 1.5e-49 192.6
Bpe13g00423 . 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 81.7 7.3e-50 193.7
Bpe05g00323 BCT 1 190 C2C2-CO-like Transcription Factor Family AT4G39070 56.5 7.6e-55 210.7
Bpe07g00449 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 57.5 6.4e-54 207.6
Bpe15g00849 BCT 1 181 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 7.1e-53 204.1
Bpe05g00126 BCT,CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.9 1.8e-48 189.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22281 PF00643 zf-B_box 8.00E-08 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00423 Bpe_Chr13 FPKM 10.354547 11.435754 10.931129 11.013438 18.738461 18.218212 18.476532 13.671102 12.202041 12.352051