Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00424 ATGGGCCTGAAAGGCCCAGCTTCCCTGGAAAAAGAGGGGAGCTTTACGCAGGAAAAGCGATATTTTTCAGTTGGGACAATCGCAACGACGATCTGGACGGAGATGATAACGGGGTGGCGACGCTTAAGCTTCTTGGCGCTGTTCTCGATCTTTTTCACTCTGGGTAACGCCATACCTCCTTCGAAGTTTCTCCGATTCTCGGAAGACGACAAATATTTGACCCAGAAGGAGCTCTGGTTCAATCAGACCCTTGACCATTTCTCTCCCTACGATCATCGTCATTTTGGACAGCGTTACTATGAATTCCTCGACTACTTCAGAATTCCAGATGGGCCAATTTTTTTGAAACTTTGTGGTGAATCTTCCTGTCCTGGAATAGCCAACGATTACATAAGTGTTTTGGCAAAGAAGTTTGGAGCAGCTGTGGTTTCTCTCGAGCATCGTTACTACGGGAAAAGCTCACCGGTTAAGTCGTTGACTACGGCCAACTTGAGATATCTTTCTTCAAAGCATGCTCTTTTCGATTTGGCTGCTTTTCGTCAATACTATCAGAATTCCTTGAATGCAAAACTCAACCGATCAAATGGCGAAAATCCATGGTTTGTCTTTGGTGTTTCCTACTCCGGAGCTCTTAGTGCATGGTTTCGTCTTAAATTCCCTCATTTAACGTGTGGAAGTCTTGCAAGTTCGGCAGTTGTTCTTGCTGTTTATAATTTCACTGAATTTGACCAGCAGATAGGTGAATCTGCTGGTCCAGAATGTAAAGCTGCATTACAGGAAATGAATAAACTCGTTGAACAAATGCTTGTGACAGATAAAAAAGAAGTAAAGGCATTGTTTGGTGCAACTCAGCTAGAAATTGATGGAGATTTCTTGTACTTCCTCGCAGATGCTGCTGTTACTGCATTTCAGTACGGAAATCCCGATAAAGTATGCTCCCCTCTAATTGAAGCGAAAAAGGCCGGAAATGGTTTGTTGGACGCTTATGCCAAATATGTGAAAGATTATTACCTTGGAAGCTTTGGTGTCGATGTTCAAACATACAATCAGAAACACTTGAAGAATACGAATCCAACCAAAGACAGTGCTGATAGGTTGTGGTGGTTCCAAGTTTGTACCGAAGTCGCATATTTTCAGGTGGCACCGGAAAACGATAGTGTTCGCTCCTCAAAAGTTGATGCAAGGCCTGTCTCTGACCACCTTATCGATCTTCATCCTTTGGTTGATTCATTTGCCTATCACTTGGATCTTTGCAAAAATGTTTTTGGAGAAGGCGTCTATCCTGATGTAACAGCGACAAACATATATTACGGGGGAACAAAAATTGCTGGTATGTTTTCAACCAATTTTATGATTATATTGTATTTAAATGTTTGGATCGAATATGAATTTGCAGGCTCAAAAATAGTCTTTACAAATGGTTCGCAAGACCCTTGGCGTCGAGCATCTAAGCAGATATCGTCTCCAGACTTGCCGTCACACCTCATCACCTGTCATAACTGTGGCCACGGAATTGACATGCGAGGATGTCCTCAAGTTCCATTAAGCCCGGAAGGCGATGCTCGGAATTGCAGCTCTCCTGATGCAGTGCACAAAGTCAGGCAACAGATTGTTGAACAGATCGACCTTTGGCTGTCAGAGTGCCAATACAATAGTAGAAACTATGCATGA 1671 43.15 MGLKGPASLEKEGSFTQEKRYFSVGTIATTIWTEMITGWRRLSFLALFSIFFTLGNAIPPSKFLRFSEDDKYLTQKELWFNQTLDHFSPYDHRHFGQRYYEFLDYFRIPDGPIFLKLCGESSCPGIANDYISVLAKKFGAAVVSLEHRYYGKSSPVKSLTTANLRYLSSKHALFDLAAFRQYYQNSLNAKLNRSNGENPWFVFGVSYSGALSAWFRLKFPHLTCGSLASSAVVLAVYNFTEFDQQIGESAGPECKAALQEMNKLVEQMLVTDKKEVKALFGATQLEIDGDFLYFLADAAVTAFQYGNPDKVCSPLIEAKKAGNGLLDAYAKYVKDYYLGSFGVDVQTYNQKHLKNTNPTKDSADRLWWFQVCTEVAYFQVAPENDSVRSSKVDARPVSDHLIDLHPLVDSFAYHLDLCKNVFGEGVYPDVTATNIYYGGTKIAGMFSTNFMIILYLNVWIEYEFAGSKIVFTNGSQDPWRRASKQISSPDLPSHLITCHNCGHGIDMRGCPQVPLSPEGDARNCSSPDAVHKVRQQIVEQIDLWLSECQYNSRNYA 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11864990 11868692 + Bpe006549.1 Bpe13g00424 113204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00424 556 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 444 551 - -
Bpe13g00424 556 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 45 444 - -
Bpe13g00424 556 Gene3D alpha/beta hydrolase 73 310 IPR029058 -
Bpe13g00424 556 Gene3D alpha/beta hydrolase 327 549 IPR029058 -
Bpe13g00424 556 PANTHER OS10G0511600 PROTEIN 444 551 - -
Bpe13g00424 556 PANTHER OS10G0511600 PROTEIN 45 444 - -
Bpe13g00424 556 Pfam Serine carboxypeptidase S28 82 508 IPR008758 GO:0006508|GO:0008236
Bpe13g00424 556 SUPERFAMILY alpha/beta-Hydrolases 104 301 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00424 - - - bhj:120092798 763.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00424 Bpe-Chr13:11864990 Bpe15g00282 Bpe-Chr15:14293783 1.02E-20 dispersed
Bpe13g00424 Bpe-Chr13:11864990 Bpe02g02145 Bpe-Chr2:22772554 2.42E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1082 . Blo16g00073 . . . Bpe13g00424 . . Cmo04g00795 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1667 Cone9ag1589 . . Chy07g01229 . . . Bda11g01844 . . . . Bma06g00104 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00580 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003706 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 2 7 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00424 Bpe_Chr13 FPKM 2.915823 2.702012 6.791624 8.412616 13.101432 12.360263 15.285334 8.852705 9.903255 9.996232