Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00425 ATGGAAGTTGATGACCAACCTGATTTGGGATTGCGTAAAGCTCTTATTCATGGTCAAGTGTCGACCCAGCTGGGGGGCCTGCGGATTGACAATTCCGTCCCCTGCTTGGAGCTTATGGATGTCGATCAGTCCCGAACCCCACGTGCTATGGACGATTCCCAGCTTCTCGGAGGTTCTGACTCTGTTCCGGATGAACGCGTGGATGATAGGGCGGCTGCAATGGGTGTCCCTTTAGCGGAAATTGCGGTGAAGGTGAGAGCTGAGGAGAATGGTTTGGGTAAGCGGAGACGGGGACGGCCCCCTCGGGCTCAACAAAAAGCGACGCCGACACCGAAGAAGAGCATTAGTACCGACGAAGAGGATGTCTGTTTTATATGCTTTGATGGTGGGAGCCTAGTTCTTTGTGATCGCCGGGGCTGCCCCAAGGCATATCACCCTGCTTGCATCAAGAGGGACGAAGCATTCTTTCGATCTACTGCTAAATGGAATTGTGGATGGCATATATGCAGCAGTTGCCGGAAGGCGTCTCATTATATGTGCTACACATGTACTTATTCTTTGTGCAAAGGATGCATTAAGGATGCTGATTATCAATGTGTTAGGGGTAGCAAAGGACTGTGTGGAACTTGTATGAGAACGATAATGCTATTAGAGAAAAGCTTGCCAGGAAGTGGAGAACATTTGGTTCAAGTCGATTTTGATGATAAAAGTAGTTGGGAGTATCTTTTCAAAATCTATTGGGTTTACTTAAAACGAAAGCTGTCTTTAACTCTTGATGATCTAATTCAAGCTAAAAATCCCTGGAACGAAGGCGGGACCATGGATCAAAATGGGGAATCAATTGGCAATTGTCATGATGCTAATAATGGCAAGAATTGTCGCATCGATAGTGCTGGTGGAGGTGCAATTGCTGCCAATTCTAAGAGGAAAACATTTAAGAGGCAGCAAAATTTTCCCTCCAGGGTGAACTTGATGAACAATAACACGACGATTGAAGGAAATTCTTGGGCTACAAAGGAGCTTTTGGACTTTGTTGCTCACGCGAGAAATGGTGATACATCTGCGCTTTCTCAGTTTCATGTACAGTCTCTAGTGCTGGAATATATTAAAGCAAATAATCTTCGCGATCCTCAACAGAGAAGTCAAATTATTTGTGATCTTATGCTGATGAATCTGTTTGGAAAACAACGAGTTGGTCATTTTGAAATGCTCAAGCTTCTTGAATACCATTTTCTCACAAAAGAAAGTTCTTTAGCAGTCGACAGAAATAGCAAAGTTCTTGATGTCGTAGTTGATAGTTACCAATCAATAAGTGATCGTGATAGAAAGCGTAAAACACGTAAAAAGGCAGATGATAGGAAGCAACTGATGAATCCAGATGAATATGCAGCTATTGATGTACACAACATCAACCTGATTTACTTATCACGTAATTTGATAGAGTCCATAATGGGTGATGCCGAAAACTTCCGTGACAAAGTTGTGGATTCATTTGTTCGAATACGAATTTCAAACCATGATCAAAAGCCTGACGTGTATAGGCTTGTCCAAGTTGTAGGCACTAGCAAGAGTTCTGAGCCATATGTGATTGGTGAGAAAACAGCTGATGTAATGCTTGATGTATTGAATTTAGACAAGAAAGAGGCAGTATCAATCGAAGGCATTTCAAATCAAGACTTTTCCGAGGATGAATGCAGGCGTCTACATGAGAGTGTAAAATGTGGGCTTCTTAAGAGATTTACTGTGGGAGAGATTCAGAAGAAAGCAATGGCACTTCAAACGCTGAAGGTTAATGATCGTATGGAATCAGAGATATTGCGGCTTAATCATCTCCGAGACCGAGCAAGTGAGAAGGGACACAAAAAAGACCTTAGAGAGTGTGTGGAAAAATTACAGCTTCTTAACTCTCCTGAAGAACGACGTCGTCGGCTTGTTGAAATCCCTGAAATACATGTGGATCCAACTTTGGATCTGAGTTTCAAATCTGACGAACATACAAAAGAATTAAACAAGAGTAAGCAAGGTCGTTTTAAGAGAGCATGTAAAACTGGCTCTGGTAGAAAGTGTGGAGGATGGGATCAATTGATTGATTCGAGAAGCAGGATAGAAAATCGTTCGGCTATTACTTCTGGACAAAATATGCAGATATGTACAGCCAATCATTTGAATAATCCCACCAGTTTAGTCATTCGTAATGGGAGTAATCCTCTTTCAAATGGGATAGAACACTCCAATGATATTGATATGGACAAGATTTGGCACTACCAAGACCCCGCTGGAAAAATTCAGGGTCCGTTTTCAATGTCACAGCTGCAAAAATGGAGTTCAGGCGGACACTTCCCTCCTCATTTAAGAGTATGGAAGATAAGTGAAATGCCCGGTGATTCCATACTTCTAACCGATGCAATGAATGGGCAATACGGGAAGAACTCGGTCAAAATACTTGAAGTATTTGGTCGATGTTCTGATGATGGTGATAATCAGCCAAATGATGAGTGGAGCCGAAATCGACATTCTAACGAGTCGGGCTCTCCAACAGATTGTTCTCTACCTGCAGATGGTGTCAACTCTAGCGAGTTTCGGCACAACGGTTTTGAGCAAAGAACTGCAAAGGAAGATAGGGGATATAGCTGCGAGAAACGTTCTGACAGTGACGGCTGTTCTGGGCAGTCTTCTGGTCAAAATTGGAGACCTCAGCCTGCAAATGCTACTCTGGATTCTAGAAGTGGTGGCATTGCCTTGTCTAATTCGATTGAACCACAAAACCTGAACTTTGATTTCCCTGATCTTCCTAGCCCCACTCTGGCAAAATCGGATGTGGGCCTTATAGATCAAGCTGCTGAAATCAAACAATCTGCATCTTCAAGGATCCTTGTTCAAGATTCAGTTCCTAGCTGGAGTACAGGTTCGAGTTTGGTCGGCGGAAGGAGACAGCTTGCTGTTTATTCTCCTACACGAGCCAAAGCTTCTAAGGAGGAATGGGACTCCAGTCTTATTACTTCATCTTCTCTGAAACCAGCTGAATTTATCAGTGATTGTGCTGCTACTCCTGCTTCGGTAAACGATAGACTAACACACTCTTCGCCATCTCATCCTGCGTCGAATATATCGCATTGGCCAGAAATTATCGACCCTGACGAGTTCAACTCCTTAGGAGACGAATCACTCTCGGATTTGCTTGCGGAAGTAGAAGCTATGGAATCTTTGAGCGAATTGGCTTCGTCAACATCGATGATGAACTGTCGTGATGATTTGACGCTGGGTTGTAAAACTGATTGTTTTAGTTCTATCGGGGGCTTGAGTCCTACTCCAGAGATGGGAAGAGGCGATGCTCTGAGCTCCACCGGTGATGGACAGGTTCCATCCCAATCCACAATCACAGACAAACCGCTTCTGAGACTGCATATGTTTGATATTGATCTCCAAATGAAGGTAGCAGGCCATTCATCAGCCACTGTCGAAGTGGATATAAATAAGAAGTACGACAATGTTTCAACCAATCAACGGAAAGGCAGTACCGGAATGCAAATCTCAACGCATTCTGCAGCTTTAACCATGGAAACTGCAGAAAACACATGGAGAATCGGATCAGAAGCTACAGATGCTAGTTGGGGAAGTGCAGATATCGAGTGGGGAGGGATCAATAGAGGAAACTCAAATTCCAGTCGGGAAATTCCACGGGAATCGATCCAAGAAATGGGAAGCATAAATTCAGGCCCGACAGCTGCATATAATACAACCAACTGGTATGGCCAACTGAAATATGGTATTGATAGACTATCAAGTCCTAGAGATAACGGTAGAGGTAGCTCTTTCTGGGATAAGCAACCAGTGTTCGGAGGCGGGAATCAAAGTGCACAATCCCGGGGGCCTCCGAGAAGTCAAGGCCAGCAAGTTTGTAAATTTTACGAGAGCGGGTGTTGCAAACGGGGGGCTTCGTGTAGTTACTTGCACCCTTAA 3960 43.91 MEVDDQPDLGLRKALIHGQVSTQLGGLRIDNSVPCLELMDVDQSRTPRAMDDSQLLGGSDSVPDERVDDRAAAMGVPLAEIAVKVRAEENGLGKRRRGRPPRAQQKATPTPKKSISTDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSTAKWNCGWHICSSCRKASHYMCYTCTYSLCKGCIKDADYQCVRGSKGLCGTCMRTIMLLEKSLPGSGEHLVQVDFDDKSSWEYLFKIYWVYLKRKLSLTLDDLIQAKNPWNEGGTMDQNGESIGNCHDANNGKNCRIDSAGGGAIAANSKRKTFKRQQNFPSRVNLMNNNTTIEGNSWATKELLDFVAHARNGDTSALSQFHVQSLVLEYIKANNLRDPQQRSQIICDLMLMNLFGKQRVGHFEMLKLLEYHFLTKESSLAVDRNSKVLDVVVDSYQSISDRDRKRKTRKKADDRKQLMNPDEYAAIDVHNINLIYLSRNLIESIMGDAENFRDKVVDSFVRIRISNHDQKPDVYRLVQVVGTSKSSEPYVIGEKTADVMLDVLNLDKKEAVSIEGISNQDFSEDECRRLHESVKCGLLKRFTVGEIQKKAMALQTLKVNDRMESEILRLNHLRDRASEKGHKKDLRECVEKLQLLNSPEERRRRLVEIPEIHVDPTLDLSFKSDEHTKELNKSKQGRFKRACKTGSGRKCGGWDQLIDSRSRIENRSAITSGQNMQICTANHLNNPTSLVIRNGSNPLSNGIEHSNDIDMDKIWHYQDPAGKIQGPFSMSQLQKWSSGGHFPPHLRVWKISEMPGDSILLTDAMNGQYGKNSVKILEVFGRCSDDGDNQPNDEWSRNRHSNESGSPTDCSLPADGVNSSEFRHNGFEQRTAKEDRGYSCEKRSDSDGCSGQSSGQNWRPQPANATLDSRSGGIALSNSIEPQNLNFDFPDLPSPTLAKSDVGLIDQAAEIKQSASSRILVQDSVPSWSTGSSLVGGRRQLAVYSPTRAKASKEEWDSSLITSSSLKPAEFISDCAATPASVNDRLTHSSPSHPASNISHWPEIIDPDEFNSLGDESLSDLLAEVEAMESLSELASSTSMMNCRDDLTLGCKTDCFSSIGGLSPTPEMGRGDALSSTGDGQVPSQSTITDKPLLRLHMFDIDLQMKVAGHSSATVEVDINKKYDNVSTNQRKGSTGMQISTHSAALTMETAENTWRIGSEATDASWGSADIEWGGINRGNSNSSREIPRESIQEMGSINSGPTAAYNTTNWYGQLKYGIDRLSSPRDNGRGSSFWDKQPVFGGGNQSAQSRGPPRSQGQQVCKFYESGCCKRGASCSYLHP 1319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11869794 11876021 + Bpe006550.1 Bpe13g00425 113205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00425 1319 ProSitePatterns Zinc finger PHD-type signature. 123 183 IPR019786 -
Bpe13g00425 1319 Gene3D SWIB/MDM2 domain 325 419 IPR036885 -
Bpe13g00425 1319 MobiDBLite consensus disorder prediction 1261 1296 - -
Bpe13g00425 1319 CDD GYF 750 807 IPR003169 GO:0005515
Bpe13g00425 1319 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 856 1319 - -
Bpe13g00425 1319 Pfam Plus-3 domain 469 572 IPR004343 GO:0003677
Bpe13g00425 1319 SUPERFAMILY Plus3-like 465 594 IPR036128 GO:0003677
Bpe13g00425 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 210 IPR013083 -
Bpe13g00425 1319 ProSiteProfiles SWIB/MDM2 domain profile. 330 413 IPR003121 -
Bpe13g00425 1319 SMART swib_2 325 416 IPR019835 -
Bpe13g00425 1319 CDD SWIB-MDM2_like 336 411 - -
Bpe13g00425 1319 Pfam GYF domain 753 791 IPR003169 GO:0005515
Bpe13g00425 1319 SUPERFAMILY FYVE/PHD zinc finger 113 167 IPR011011 -
Bpe13g00425 1319 ProSiteProfiles Plus3 domain profile. 464 597 IPR004343 GO:0003677
Bpe13g00425 1319 SUPERFAMILY GYF domain 747 804 IPR035445 -
Bpe13g00425 1319 SUPERFAMILY CCCH zinc finger 1295 1318 IPR036855 GO:0046872
Bpe13g00425 1319 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 856 1319 - -
Bpe13g00425 1319 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 36 826 - -
Bpe13g00425 1319 MobiDBLite consensus disorder prediction 44 64 - -
Bpe13g00425 1319 MobiDBLite consensus disorder prediction 89 115 - -
Bpe13g00425 1319 MobiDBLite consensus disorder prediction 822 910 - -
Bpe13g00425 1319 SMART gyf_5 751 806 IPR003169 GO:0005515
Bpe13g00425 1319 ProSiteProfiles GYF domain profile. 750 804 IPR003169 GO:0005515
Bpe13g00425 1319 Pfam SWIB/MDM2 domain 346 411 IPR003121 -
Bpe13g00425 1319 SMART PHD_3 122 168 IPR001965 -
Bpe13g00425 1319 SUPERFAMILY SWIB/MDM2 domain 334 414 IPR036885 -
Bpe13g00425 1319 CDD PHD5_NSD 122 167 - -
Bpe13g00425 1319 ProSiteProfiles Zinc finger PHD-type profile. 120 186 IPR019787 -
Bpe13g00425 1319 MobiDBLite consensus disorder prediction 1100 1125 - -
Bpe13g00425 1319 MobiDBLite consensus disorder prediction 839 853 - -
Bpe13g00425 1319 Gene3D - 465 594 IPR036128 GO:0003677
Bpe13g00425 1319 Coils Coil 598 618 - -
Bpe13g00425 1319 MobiDBLite consensus disorder prediction 1277 1296 - -
Bpe13g00425 1319 MobiDBLite consensus disorder prediction 864 881 - -
Bpe13g00425 1319 SMART rtf1 464 574 IPR004343 GO:0003677
Bpe13g00425 1319 MobiDBLite consensus disorder prediction 883 910 - -
Bpe13g00425 1319 ProSiteProfiles Zinc finger C3H1-type profile. 1294 1319 IPR000571 GO:0046872
Bpe13g00425 1319 Gene3D - 752 809 IPR035445 -
Bpe13g00425 1319 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 36 826 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00425 - - - zju:107424392 1149.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00425 Bpe15g00463 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00083 Bpe-Chr13:4969965 Bpe13g00425 Bpe-Chr13:11869794 2.00E-07 dispersed
Bpe13g00425 Bpe-Chr13:11869794 Bpe04g01561 Bpe-Chr4:21946348 6.94E-06 dispersed
Bpe15g00843 Bpe-Chr15:18455048 Bpe13g00425 Bpe-Chr13:11869794 2.67E-06 transposed
Bpe15g00935 Bpe-Chr15:19115083 Bpe13g00425 Bpe-Chr13:11869794 1.51E-17 transposed
Bpe13g00425 Bpe-Chr13:11869794 Bpe15g00463 Bpe-Chr15:16014176 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22282 PF03126 Plus-3 4.60E-23 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00425 Bpe_Chr13 FPKM 30.651072 28.749901 23.914484 28.025478 8.292773 10.464452 11.026389 12.277688 12.164198 15.572661