Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe13g00427 | ATGTCTGTGAATTTGAGCCCTCAGCTACGTTGGGATGAATTGGGGTTGTCCGGTGTTCAAAATGTCGTCTCTTGTGATGACTTTTCTGTAGACGAACTCCTCAATTTCTCTAACGAAGATGGATTTGAAGGCAGAGAGAATGGAGAAGAAGAAAACGACGACCATAAGGGCTTTGCTTGTGTCTCTGTTTCTCCGAAGGAACTGGAAAACTACGAAAACCCAAATGAAAGTTTTTCTGTAACAGACGGATTTGGGTCTTTGCCCACGAGCGAGCTCAGTGTTCCGATAGATGATTTGGCGGACCTCGAATGGTTGTCCCATTTCGTTGATGATTCCTTCTTCGAACACTCTGCGCCATTCCCGGCGGGAATTTGGACGGGAAAGCCGAAGCAGAGTGAACTAGAGAGAGAAACAAAGGCTTTTACCCCCCCTCAGCCTTGTTTCAAAACTCCGATTCCTGCTAAGGCGAGAAGCAAGCGGCCGAGAACCGGAGGTCGGGTTTGGGTTGTCGGATTCTCGTCGTTAATGGAATCTTCCTCAAGCTCAACTACGTCATCGTCTTCCTCTTCATCACCGTCAAGCCCTTTGCTCAACAACACCATGGTTCCTCTCCCCGCCGAGGTAGTTTTTCGGTACGCAAAGCCACCAGCGAAGAAACTGAAGATAAAGTCACCAGTCAACGGAAATGGCCGAAGTGGAACCACCCAGACAACTCGCCGGTGCAGCCATTGCGGCGTTCAGAAAACACCACAATGGAGAGCCGGTCCTCTCGGAGCAAAGACACTCTGCAACGCATGCGGTGTACGATACAAATCGGGTCGACTACTACCCGAATATAGACCCGCGTGCAGCCCAACATTTTCAAGCGAATTACACTCAAATCACCACCGTAGAATCCTGGAAATGCGGCGGAAGAAGGACGATCCAGGACTTCCACAGCAGGGTTTCACCCCTCCTCCGGTCGTTCCCAGTTTTTGA | 978 | 50.2 | MSVNLSPQLRWDELGLSGVQNVVSCDDFSVDELLNFSNEDGFEGRENGEEENDDHKGFACVSVSPKELENYENPNESFSVTDGFGSLPTSELSVPIDDLADLEWLSHFVDDSFFEHSAPFPAGIWTGKPKQSELERETKAFTPPQPCFKTPIPAKARSKRPRTGGRVWVVGFSSLMESSSSSTTSSSSSSSPSSPLLNNTMVPLPAEVVFRYAKPPAKKLKIKSPVNGNGRSGTTQTTRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRRILEMRRKKDDPGLPQQGFTPPPVVPSF | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 11881662 | 11882727 | - | Bpe006551.1 | Bpe13g00427 | 113207 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe13g00427 | 325 | SMART | GATA_3 | 235 | 289 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe13g00427 | 325 | MobiDBLite | consensus disorder prediction | 178 | 198 | - | - | |
Bpe13g00427 | 325 | PIRSF | Txn_fac_GATA_plant | 8 | 315 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Bpe13g00427 | 325 | PANTHER | GATA TRANSCRIPTION FACTOR | 20 | 310 | - | - | |
Bpe13g00427 | 325 | PANTHER | GATA TRANSCRIPTION FACTOR | 20 | 310 | - | - | |
Bpe13g00427 | 325 | MobiDBLite | consensus disorder prediction | 137 | 162 | - | - | |
Bpe13g00427 | 325 | Gene3D | - | 231 | 308 | IPR013088 | GO:0006355|GO:0008270 | |
Bpe13g00427 | 325 | ProSiteProfiles | GATA-type zinc finger domain profile. | 235 | 271 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe13g00427 | 325 | ProSitePatterns | GATA-type zinc finger domain. | 241 | 266 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe13g00427 | 325 | Pfam | GATA zinc finger | 241 | 275 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe13g00427 | 325 | MobiDBLite | consensus disorder prediction | 38 | 57 | - | - | |
Bpe13g00427 | 325 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 237 | 298 | - | - | |
Bpe13g00427 | 325 | CDD | ZnF_GATA | 240 | 288 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe13g00427 | 325 | MobiDBLite | consensus disorder prediction | 304 | 325 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe06g00027 | Bpe13g00427 | CCT | |
Bpe06g00027 | Bpe13g00427 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe05g00319 | Bpe-Chr5:16803996 | Bpe13g00427 | Bpe-Chr13:11881662 | 1.10E-70 | dispersed | |
Bpe06g00746 | Bpe-Chr6:17839057 | Bpe13g00427 | Bpe-Chr13:11881662 | 1.07E-48 | dispersed | |
Bpe07g00497 | Bpe-Chr7:9691597 | Bpe13g00427 | Bpe-Chr13:11881662 | 8.20E-72 | dispersed | |
Bpe10g00664 | Bpe-Chr10:13221711 | Bpe13g00427 | Bpe-Chr13:11881662 | 2.57E-46 | dispersed | |
Bpe13g00427 | Bpe-Chr13:11881662 | Bpe04g01884 | Bpe-Chr4:23904688 | 1.19E-44 | dispersed | |
Bpe13g00427 | Bpe-Chr13:11881662 | Bpe06g00027 | Bpe-Chr6:313581 | 3.23E-94 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22283 | PF00320 | GATA | 1.90E-16 | CL0167 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe13g00427 | - | - | pmum:103340171 | 332.413 |