Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00427 ATGTCTGTGAATTTGAGCCCTCAGCTACGTTGGGATGAATTGGGGTTGTCCGGTGTTCAAAATGTCGTCTCTTGTGATGACTTTTCTGTAGACGAACTCCTCAATTTCTCTAACGAAGATGGATTTGAAGGCAGAGAGAATGGAGAAGAAGAAAACGACGACCATAAGGGCTTTGCTTGTGTCTCTGTTTCTCCGAAGGAACTGGAAAACTACGAAAACCCAAATGAAAGTTTTTCTGTAACAGACGGATTTGGGTCTTTGCCCACGAGCGAGCTCAGTGTTCCGATAGATGATTTGGCGGACCTCGAATGGTTGTCCCATTTCGTTGATGATTCCTTCTTCGAACACTCTGCGCCATTCCCGGCGGGAATTTGGACGGGAAAGCCGAAGCAGAGTGAACTAGAGAGAGAAACAAAGGCTTTTACCCCCCCTCAGCCTTGTTTCAAAACTCCGATTCCTGCTAAGGCGAGAAGCAAGCGGCCGAGAACCGGAGGTCGGGTTTGGGTTGTCGGATTCTCGTCGTTAATGGAATCTTCCTCAAGCTCAACTACGTCATCGTCTTCCTCTTCATCACCGTCAAGCCCTTTGCTCAACAACACCATGGTTCCTCTCCCCGCCGAGGTAGTTTTTCGGTACGCAAAGCCACCAGCGAAGAAACTGAAGATAAAGTCACCAGTCAACGGAAATGGCCGAAGTGGAACCACCCAGACAACTCGCCGGTGCAGCCATTGCGGCGTTCAGAAAACACCACAATGGAGAGCCGGTCCTCTCGGAGCAAAGACACTCTGCAACGCATGCGGTGTACGATACAAATCGGGTCGACTACTACCCGAATATAGACCCGCGTGCAGCCCAACATTTTCAAGCGAATTACACTCAAATCACCACCGTAGAATCCTGGAAATGCGGCGGAAGAAGGACGATCCAGGACTTCCACAGCAGGGTTTCACCCCTCCTCCGGTCGTTCCCAGTTTTTGA 978 50.2 MSVNLSPQLRWDELGLSGVQNVVSCDDFSVDELLNFSNEDGFEGRENGEEENDDHKGFACVSVSPKELENYENPNESFSVTDGFGSLPTSELSVPIDDLADLEWLSHFVDDSFFEHSAPFPAGIWTGKPKQSELERETKAFTPPQPCFKTPIPAKARSKRPRTGGRVWVVGFSSLMESSSSSTTSSSSSSSPSSPLLNNTMVPLPAEVVFRYAKPPAKKLKIKSPVNGNGRSGTTQTTRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRRILEMRRKKDDPGLPQQGFTPPPVVPSF 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11881662 11882727 - Bpe006551.1 Bpe13g00427 113207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00427 325 SMART GATA_3 235 289 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 MobiDBLite consensus disorder prediction 178 198 - -
Bpe13g00427 325 PIRSF Txn_fac_GATA_plant 8 315 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bpe13g00427 325 PANTHER GATA TRANSCRIPTION FACTOR 20 310 - -
Bpe13g00427 325 PANTHER GATA TRANSCRIPTION FACTOR 20 310 - -
Bpe13g00427 325 MobiDBLite consensus disorder prediction 137 162 - -
Bpe13g00427 325 Gene3D - 231 308 IPR013088 GO:0006355|GO:0008270
Bpe13g00427 325 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 Pfam GATA zinc finger 241 275 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 MobiDBLite consensus disorder prediction 38 57 - -
Bpe13g00427 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 298 - -
Bpe13g00427 325 CDD ZnF_GATA 240 288 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 MobiDBLite consensus disorder prediction 304 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00427 - - - pmum:103340171 332.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00027 Bpe13g00427 CCT
Bpe06g00027 Bpe13g00427 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00319 Bpe-Chr5:16803996 Bpe13g00427 Bpe-Chr13:11881662 1.10E-70 dispersed
Bpe06g00746 Bpe-Chr6:17839057 Bpe13g00427 Bpe-Chr13:11881662 1.07E-48 dispersed
Bpe07g00497 Bpe-Chr7:9691597 Bpe13g00427 Bpe-Chr13:11881662 8.20E-72 dispersed
Bpe10g00664 Bpe-Chr10:13221711 Bpe13g00427 Bpe-Chr13:11881662 2.57E-46 dispersed
Bpe13g00427 Bpe-Chr13:11881662 Bpe04g01884 Bpe-Chr4:23904688 1.19E-44 dispersed
Bpe13g00427 Bpe-Chr13:11881662 Bpe06g00027 Bpe-Chr6:313581 3.23E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00427 CCT,ECH 14 325 C2C2-Gata Transcription Factor Family AT5G66320 51.3 1.4e-67 253.4
Bpe06g00027 CCT,ECH 4 297 C2C2-Gata Transcription Factor Family AT5G66320 50.6 2.0e-61 233.0
Bpe06g00027 CCT,ECH 44 297 C2C2-Gata Transcription Factor Family AT3G51080 51.1 6.6e-51 198.0
Bpe08g01446 . 1 514 C2C2-Gata Transcription Factor Family AT4G17570 51.8 3.4e-129 458.8
Bpe07g00195 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 52.7 3.6e-123 438.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22283 PF00320 GATA 1.90E-16 CL0167 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00427 Bpe_Chr13 FPKM 20.804024 24.496307 14.153862 14.872635 22.861963 26.410568 25.065958 8.90048 10.477994 9.779941