Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00427 ATGTCTGTGAATTTGAGCCCTCAGCTACGTTGGGATGAATTGGGGTTGTCCGGTGTTCAAAATGTCGTCTCTTGTGATGACTTTTCTGTAGACGAACTCCTCAATTTCTCTAACGAAGATGGATTTGAAGGCAGAGAGAATGGAGAAGAAGAAAACGACGACCATAAGGGCTTTGCTTGTGTCTCTGTTTCTCCGAAGGAACTGGAAAACTACGAAAACCCAAATGAAAGTTTTTCTGTAACAGACGGATTTGGGTCTTTGCCCACGAGCGAGCTCAGTGTTCCGATAGATGATTTGGCGGACCTCGAATGGTTGTCCCATTTCGTTGATGATTCCTTCTTCGAACACTCTGCGCCATTCCCGGCGGGAATTTGGACGGGAAAGCCGAAGCAGAGTGAACTAGAGAGAGAAACAAAGGCTTTTACCCCCCCTCAGCCTTGTTTCAAAACTCCGATTCCTGCTAAGGCGAGAAGCAAGCGGCCGAGAACCGGAGGTCGGGTTTGGGTTGTCGGATTCTCGTCGTTAATGGAATCTTCCTCAAGCTCAACTACGTCATCGTCTTCCTCTTCATCACCGTCAAGCCCTTTGCTCAACAACACCATGGTTCCTCTCCCCGCCGAGGTAGTTTTTCGGTACGCAAAGCCACCAGCGAAGAAACTGAAGATAAAGTCACCAGTCAACGGAAATGGCCGAAGTGGAACCACCCAGACAACTCGCCGGTGCAGCCATTGCGGCGTTCAGAAAACACCACAATGGAGAGCCGGTCCTCTCGGAGCAAAGACACTCTGCAACGCATGCGGTGTACGATACAAATCGGGTCGACTACTACCCGAATATAGACCCGCGTGCAGCCCAACATTTTCAAGCGAATTACACTCAAATCACCACCGTAGAATCCTGGAAATGCGGCGGAAGAAGGACGATCCAGGACTTCCACAGCAGGGTTTCACCCCTCCTCCGGTCGTTCCCAGTTTTTGA 978 50.2 MSVNLSPQLRWDELGLSGVQNVVSCDDFSVDELLNFSNEDGFEGRENGEEENDDHKGFACVSVSPKELENYENPNESFSVTDGFGSLPTSELSVPIDDLADLEWLSHFVDDSFFEHSAPFPAGIWTGKPKQSELERETKAFTPPQPCFKTPIPAKARSKRPRTGGRVWVVGFSSLMESSSSSTTSSSSSSSPSSPLLNNTMVPLPAEVVFRYAKPPAKKLKIKSPVNGNGRSGTTQTTRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRRILEMRRKKDDPGLPQQGFTPPPVVPSF 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11881662 11882727 - Bpe006551.1 Bpe13g00427 113207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00427 325 SMART GATA_3 235 289 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 MobiDBLite consensus disorder prediction 178 198 - -
Bpe13g00427 325 PIRSF Txn_fac_GATA_plant 8 315 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bpe13g00427 325 PANTHER GATA TRANSCRIPTION FACTOR 20 310 - -
Bpe13g00427 325 PANTHER GATA TRANSCRIPTION FACTOR 20 310 - -
Bpe13g00427 325 MobiDBLite consensus disorder prediction 137 162 - -
Bpe13g00427 325 Gene3D - 231 308 IPR013088 GO:0006355|GO:0008270
Bpe13g00427 325 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 Pfam GATA zinc finger 241 275 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 MobiDBLite consensus disorder prediction 38 57 - -
Bpe13g00427 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 298 - -
Bpe13g00427 325 CDD ZnF_GATA 240 288 IPR000679 GO:0006355|GO:0043565
Bpe13g00427 325 MobiDBLite consensus disorder prediction 304 325 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe06g00027 Bpe13g00427 CCT
Bpe06g00027 Bpe13g00427 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00319 Bpe-Chr5:16803996 Bpe13g00427 Bpe-Chr13:11881662 1.10E-70 dispersed
Bpe06g00746 Bpe-Chr6:17839057 Bpe13g00427 Bpe-Chr13:11881662 1.07E-48 dispersed
Bpe07g00497 Bpe-Chr7:9691597 Bpe13g00427 Bpe-Chr13:11881662 8.20E-72 dispersed
Bpe10g00664 Bpe-Chr10:13221711 Bpe13g00427 Bpe-Chr13:11881662 2.57E-46 dispersed
Bpe13g00427 Bpe-Chr13:11881662 Bpe04g01884 Bpe-Chr4:23904688 1.19E-44 dispersed
Bpe13g00427 Bpe-Chr13:11881662 Bpe06g00027 Bpe-Chr6:313581 3.23E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22283 PF00320 GATA 1.90E-16 CL0167 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00427 - - pmum:103340171 332.413