Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00429 CGCGCTTGGAAAGATTTACGGTCGTGCCTCTGCCGATTTCAGCATTCTGTAGTTAGAAGCTTTCAACTGACCACCGGAAACCGGTATAGAAGTTTTGGTTCAGAGGCGACCGTAATACAGAGGAATCCATCATTTTCGGTGTTGAATTCCGAGGATATTTACTATTTTAAGAGTGTTTTAGGAGAGAAAAATGTTGTTCAGGATGAAGATTGGCTGCTGGCTGCCAACACAGACTGGATGAGGAAGTACAAAGGCTCAAGTAAGCTTCTGCTGCTACCTAGGAGCACTGAGGAGGTTTCTAAGATTCTTCGGTACTGTAATTCCAGATGTCTTGCCGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTGGGAGGAAGTGTTCCAGTTTATGATGAACTGCTTCCTTATGACATTACTCTGCAGGTTATCATAAATCTTGGCTCGATGAATAACATTATCTCCTTTGACAAGGTTAGTGGTATACTAGTTTGTGAAGCAGGATGCATATTGGAAAATCTGGCTTCATTTCTGGAAAACGAAGGATTCACTATGCCGCTGGACTTAGGAGCAAAAGGAAGCTGCCATATTGGTGGCAATGTTTCCACCAATGCTGGTGGTTTGCGCTTAGTTCGATATGGATCACTCCATGGAAATGTACTTGGTCTTGAAGCTATATTAGCAGATGGTTCTGTGCTTGACATGCTTGGAACTCTACGGAAAGATAATACTGGGTATGACTTAAAGCATTTGTTTATTGGAAGTGAAGGCACTTTGGGAATTATAACTAAAATTTCCGTCCTTACACCTGCAAAGATGCCCTCTACTAATGTGGCCTTTCTTGCGTGTCAAGATTATTTAAGCTGTCAGAAACTATTAGTGGCAGCAAAGATGAAACTTGGGGCAATTCTGTCTGCCTTCGAATTTCTAGATTGCGCTTCATTGAATTTGAAAAAAAAGGTTGTTGTTATAATTTTTAGTGGAAACTATTTAATCCCAATTTCAGGTATACCAGAGGCATTGATGAAAGCAGGAGCTGTGTATAAATATGATTTGTCATTACCAATTGAAGTTATGTATGACCTCGTCGAGGATATGCGATCAAGACTCGGCTCTACAGCTAACGTGATTGGATACGGGCACCTTGGAGACGGAAATTTGCATCTTAATATTTCTACTCCTCAGTACGAAGCTGGGATTTTAGCTGAAATTGAACCGTTTGTTTACGAATGGACTTCCAAGCACAGGGGAAGTATCAGTGCAGAGCATGGCCTTGGACTGATGAAAGCCAATAAGATATTGTACAGCAAGTCAAAGGAAACTGTTCAAGTAATGGCCTCCATCAAGAAGCTGTTGGACCCTCGTGGCATACTCAATCCATATAAAGTTCTTCCGGACTCATCCTTCTCTCCTTGTGAAGGTTCAACATAA 1428 41.74 RAWKDLRSCLCRFQHSVVRSFQLTTGNRYRSFGSEATVIQRNPSFSVLNSEDIYYFKSVLGEKNVVQDEDWLLAANTDWMRKYKGSSKLLLLPRSTEEVSKILRYCNSRCLAVVPQGGNTGLVGGSVPVYDELLPYDITLQVIINLGSMNNIISFDKVSGILVCEAGCILENLASFLENEGFTMPLDLGAKGSCHIGGNVSTNAGGLRLVRYGSLHGNVLGLEAILADGSVLDMLGTLRKDNTGYDLKHLFIGSEGTLGIITKISVLTPAKMPSTNVAFLACQDYLSCQKLLVAAKMKLGAILSAFEFLDCASLNLKKKVVVIIFSGNYLIPISGIPEALMKAGAVYKYDLSLPIEVMYDLVEDMRSRLGSTANVIGYGHLGDGNLHLNISTPQYEAGILAEIEPFVYEWTSKHRGSISAEHGLGLMKANKILYSKSKETVQVMASIKKLLDPRGILNPYKVLPDSSFSPCEGST 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11889102 11894687 + Bpe006553.2 Bpe13g00429 113209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00429 475 Gene3D - 37 135 IPR016167 -
Bpe13g00429 475 Gene3D - 423 463 IPR016171 -
Bpe13g00429 475 Gene3D - 344 422 - -
Bpe13g00429 475 Gene3D - 273 322 - -
Bpe13g00429 475 SUPERFAMILY FAD-linked oxidases, C-terminal domain 245 464 IPR016164 GO:0003824|GO:0050660
Bpe13g00429 475 PANTHER D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL 335 465 - -
Bpe13g00429 475 PANTHER D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL 32 319 - -
Bpe13g00429 475 ProSiteProfiles PCMH-type FAD-binding domain profile. 83 271 IPR016166 GO:0071949
Bpe13g00429 475 SUPERFAMILY FAD-binding/transporter-associated domain-like 54 268 IPR036318 GO:0050660
Bpe13g00429 475 Gene3D - 150 269 IPR016169 -
Bpe13g00429 475 Pfam FAD binding domain 89 233 IPR006094 GO:0050660
Bpe13g00429 475 Pfam FAD linked oxidases, C-terminal domain 340 462 IPR004113 GO:0003824|GO:0050660
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00429 K18204 D2HGDH; D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39] - csv:101216583 649.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01177 Bpe-Chr3:30713639 Bpe13g00429 Bpe-Chr13:11889102 3.36E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1051 . . . . . Bpe13g00429 . . . Cmo16g00694 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0783 . . . . Chy07g01262 . . . Bda11g01848 . . . . Bma06g00108 . . . Cma16g00636 . . . . Cpe14g00543 . . . . . . . Cla07g00835 Cam07g0904 Cec07g0957 Cco07g0947 Clacu07g0879 Cmu07g0879 Cre07g1240 Lsi07g00234 Csa04g00541 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009582 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00429 Bpe_Chr13 FPKM 31.622236 36.14991 46.968193 47.663059 2.770524 3.579883 3.001424 0.516164 0.514405 0.579635