Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00438 ATGGGGACGCTGGGGAGAGCTATTTATTCTGTTGGATTTTGGATCCGAGAGTCTGGTCAAGCTCTCGATCGCCTTCTCTTTCATATGCTGTCCTCTCTGCATCGGACGTTGATGAACATATTTGAAAAAGCTTCTGTAATTGATAGGAATGTTTTTGTCGCCCCAAGTACTTCAATCCTTGGCGACGTTCATGTTGGACCATGTTCCTCCATTTGGTATGGATGTGTTCTGCGAGGTGATGCTAATAGCATCAGCGTATGGGCCGGAAATCCAGCAAAATTCCTGAGAAAGCTGACAGATGAAGAGATCGTCTTTATCTGGCAATCAGCCACAAACTATTCCAACTTAGCACAGGCACATGCAACTGAAAACGCAAAGAGCTTTGATGAGATTGAGTTTGAGAAGGTTCTACGCAAGAACTTTGCAAGGCCTGATGAGGATTATGATTCAGTGATAGGCGTGGTTCGTGAAACACCTCCTGAGCTTGTCCTTCCTGATAATATACTTCTAGTAAAGGCACAAAGCGCCTAA 531 44.63 MGTLGRAIYSVGFWIRESGQALDRLLFHMLSSLHRTLMNIFEKASVIDRNVFVAPSTSILGDVHVGPCSSIWYGCVLRGDANSISVWAGNPAKFLRKLTDEEIVFIWQSATNYSNLAQAHATENAKSFDEIEFEKVLRKNFARPDEDYDSVIGVVRETPPELVLPDNILLVKAQSA 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11941781 11943630 - Bpe006562.1 Bpe13g00438 113218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00438 176 Gene3D Hexapeptide repeat proteins 36 136 - -
Bpe13g00438 176 PANTHER YRDA, PUTATIVE-RELATED 86 175 - -
Bpe13g00438 176 PANTHER YRDA, PUTATIVE-RELATED 1 86 - -
Bpe13g00438 176 SUPERFAMILY Trimeric LpxA-like enzymes 43 119 IPR011004 -
Bpe13g00438 176 PANTHER DYNACTIN SUBUNIT P25 1 86 - -
Bpe13g00438 176 PANTHER DYNACTIN SUBUNIT P25 86 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00438 K01726 GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-] - ini:109170259 159.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00219 Bpe-Chr4:1482341 Bpe13g00438 Bpe-Chr13:11941781 1.05E-37 dispersed
Bpe13g00438 Bpe-Chr13:11941781 Bpe02g00384 Bpe-Chr2:2508042 6.31E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g998 . . . . . Bpe13g00438 . . Cmo04g00810 Cmo16g00681 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1637 . . . Chy07g01248 . . . Bda11g01858 . . . . Bma06g00116 . . . Cma16g00625 . . . . Cpe14g00534 . . . . . . . Cla07g00818 Cam07g0882 Cec07g0935 Cco07g0923 Clacu07g0857 . . Lsi07g00249 Csa04g00555 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025121 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00438 Bpe_Chr13 FPKM 38.828373 43.774178 18.285744 17.477894 11.431254 10.093399 11.740161 18.87603 20.433418 20.276592