Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00441 ATGGCAAACGGAAGCAGAGTTGTCTCTGTTTTAGCCTTTTTCTTCTTTGGGTTCATTGGCTTAGCCACATTTCCTGCAGAAGCTGCATTAAAGAGTTACCAGTTTGATATTCAAGTGAAGAATGTGAGTAGATTATGCCATGCAAAACCTATCGTAACAGTAAATGGGAGGTTTCCAGGGCCAACAATCTATGCAAGAGAAGGAGACAGAGTTATCGTCAATGTCACAAACCATGCACAATATAACATCTCGATTCACTGGCATGGATTACAGCAATACAGAAATGGGTGGGCAGATGGACCAGCTTACATTACACAATGTCCCATTCAAACAGGGCGTAGCTATGCATACGACTTCAACGTGACAGGACAAAGAGGAACCTTATGGTGGCATGCCCATATTCTTTGGCTGAGGGCAACAGTTTATGGAGCAATTGTAATCATGCCTCAACAAGGAACACCATTTCCTTTCCCTCAGCCAAACAGAGAGTTCGAACTTATATTAGGAGAATGGTGGAATAATGATGTGGAAGAAATCGAGAAGCAAGGAAACATGATGGGGTTGCCACCAAACATGTCAGATGCACATACAATCAATGGGAAGCCAGGACCATTGTTTCCATGCTCTGAAAAACACACATACGCTGTGGAGGTGGAACAAGGAAAGACATACCTTCTGAGGATCATCAATGCTGCTCTCAATGATGAGCTTTTCTTTGCCATTGCGGGTCATAACTTGACAGTTGTGGAGGTCGATGCAGTTTATACAAAACCATTCACAACGCAAGCTATTCTAATTGCACCAGGCCAAACCACAAGCGTCCTACTTCAAGCGAACCAAGCTCCAAACAGATATTTCATGGCTACAAGGCCTTTCCTTGATGTTCCACTTGCCATTGATAATAAAACAGCCACTGCCATTCTTCAATACAAAGGCATTCCGAACACCGTTTTTCCTATCCTTCCTCAATTACCTGCCCCTAACGACACAGATTTCGCTTTAGGCTACAACAAGAAGCTCAAGAGCTTAAACTCACCCCAGTTTCCAGCTAATGTTCCTCTTAAGGTAGATCGAAAGCTCTTTTACGCCATCAGTTTAGGCATGAATGCTTGCCCCACATGCTTGAATGGAACCAGATTGGTTGCTTCTTTGAACAACATCTCCTTTGTGATGCCTAGTGTTGGTCTTCTTCAAGCTCACTATTTCAACAGCAAAGGGGTATTCAGAACTGATTTCCCTGACAAACCTACAACGCCTTTCAACTACACTGGTGCACCACTCAGTGCTAATCTTGGCACTACAGTCGGCACAAGGCTGAGCAAGCTTGCATTTAATTCTACTGTTGAACTGGTCCTTCAAGATACCAATCTTCTGACAGTAGAGTCACACCCATTTCATCTCCATGGCTACAACTTCTTCGTCGTTGGTACGGGAATTGGAAATTTTGATCCTGTCAAAGACCCACTAACGTATAACTTGGTCGATCCCGTTGAGAGAAATACAATTGGAGTTCCCACTGGAGGCTGGGTAACCATTCGATTTCAGGCCAATAATCCAGGTATGCTAAGAATTTTTTTGCAAAAACCGATCAGACATAACACTAATTCTTATCATTCTGCATATGCAGGAGTTTGGTTCATGCATTGTCATCTGGAACTTCATACAGGTTGGGGTTTAAAGACCGCATTCGTGGTGGAAGACGGGCCTGGGAAGGATCATGCCATCCATCCTCCACCCAAGGATCTTCCACAATGCTAG 1758 43.8 MANGSRVVSVLAFFFFGFIGLATFPAEAALKSYQFDIQVKNVSRLCHAKPIVTVNGRFPGPTIYAREGDRVIVNVTNHAQYNISIHWHGLQQYRNGWADGPAYITQCPIQTGRSYAYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPQQGTPFPFPQPNREFELILGEWWNNDVEEIEKQGNMMGLPPNMSDAHTINGKPGPLFPCSEKHTYAVEVEQGKTYLLRIINAALNDELFFAIAGHNLTVVEVDAVYTKPFTTQAILIAPGQTTSVLLQANQAPNRYFMATRPFLDVPLAIDNKTATAILQYKGIPNTVFPILPQLPAPNDTDFALGYNKKLKSLNSPQFPANVPLKVDRKLFYAISLGMNACPTCLNGTRLVASLNNISFVMPSVGLLQAHYFNSKGVFRTDFPDKPTTPFNYTGAPLSANLGTTVGTRLSKLAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPVKDPLTYNLVDPVERNTIGVPTGGWVTIRFQANNPGMLRIFLQKPIRHNTNSYHSAYAGVWFMHCHLELHTGWGLKTAFVVEDGPGKDHAIHPPPKDLPQC 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11953027 11955408 - Bpe006564.6 Bpe13g00441 113221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00441 585 TIGRFAM laccase: laccase 29 521 IPR017761 GO:0046274|GO:0048046|GO:0052716
Bpe13g00441 585 CDD CuRO_2_LCC_plant 166 310 IPR034285 -
Bpe13g00441 585 Gene3D - 21 149 IPR008972 -
Bpe13g00441 585 Pfam Multicopper oxidase 413 521 IPR011706 GO:0005507|GO:0016491
Bpe13g00441 585 Pfam Multicopper oxidase 538 567 IPR011706 GO:0005507|GO:0016491
Bpe13g00441 585 Pfam Multicopper oxidase 166 312 IPR001117 -
Bpe13g00441 585 ProSitePatterns Multicopper oxidases signature 1. 543 563 IPR033138 -
Bpe13g00441 585 PANTHER LACCASE 10 522 - -
Bpe13g00441 585 PANTHER LACCASE 538 585 - -
Bpe13g00441 585 Gene3D - 161 345 IPR008972 -
Bpe13g00441 585 Pfam Multicopper oxidase 37 151 IPR011707 GO:0005507
Bpe13g00441 585 Gene3D - 369 585 IPR008972 -
Bpe13g00441 585 CDD CuRO_1_LCC_plant 33 149 IPR034288 GO:0005507
Bpe13g00441 585 PANTHER MULTI-COPPER OXIDASE 10 522 IPR045087 -
Bpe13g00441 585 PANTHER MULTI-COPPER OXIDASE 538 585 IPR045087 -
Bpe13g00441 585 ProSitePatterns Multicopper oxidases signature 2. 548 559 IPR002355 GO:0005507
Bpe13g00441 585 SUPERFAMILY Cupredoxins 157 334 IPR008972 -
Bpe13g00441 585 SUPERFAMILY Cupredoxins 353 585 IPR008972 -
Bpe13g00441 585 SUPERFAMILY Cupredoxins 24 174 IPR008972 -
Bpe13g00441 585 CDD CuRO_3_LCC_plant 407 568 IPR034289 GO:0005507
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00441 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - fve:101314321 990.334
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe13g00441 Bpe15g00426 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00441 Bpe-Chr13:11953027 Bpe15g00517 Bpe-Chr15:16359413 0 dispersed
Bpe13g00441 Bpe-Chr13:11953027 Bpe15g00426 Bpe-Chr15:15780045 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g988 Blo04g00914 Blo16g00049 . . Bpe15g00426 Bpe13g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1630 Cone9ag1555 . . . . . . Bda11g01862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00441 Bpe_Chr13 FPKM 53.597046 47.225197 28.010195 30.870083 29.98731 27.118919 28.849619 30.253374 31.286737 31.71431