Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe13g00442 ATGTACCTTTATAATTTTCTGAACAAATACAAAGATTCTGTCATTGTGGAGAACCACGAGGGGGTCGATGAAATGGTCATTAACTCGGTTCCAGTTGAGAATTCGTTTAATGGAGCTTCGAATTGTCCATCTATGGAAGATAAACAACATACAGCATGCCGAGAAAATGCCTCTGAAGCTATAACACTTAGCAGAGCTGCTCCTCCTGCAGAATATAGATGCCCATTATCCTTGGGAATAATGTACGACCCTGTCATCATTGCATCTGGACAAACGTATGAGAGGTTTTCGATACAGAAGTGGTTTGATAAGGGTCATGATTCATGCCCAAAAACTGGAATGAAGTTGTCAAATCAATCGATGACCCCGAACCTTTCCTTGAAGGATTTAATATCGAGATGGTGCTCAAATTGTGGAGTCGCCATTTCAGATCCGAGTATCGAACCAGAAACTAAATCATGGGAATATTCATCCAACTCTAAATCATGGGAATATTCATCCAACTCTATTGCGAGCTTTGGAAGCTCCATGAATGATTTTCGTCTGCATATGGATTTTAGCAATATCTCGTTGGGATCGATGGATGGGAGTTGTTATTCATATTCATTACCTCCTAAACCTGCTATTGGGTTAAGTTTGATGTCAGTGCAGACTAAGAATGATTGTTCCACACCCCAATCTGATGCAAATCTACAAGAAGTGGATTTTGAGTTCCCGTCTAATCTTAATGAACTTGAATGGGAGTTACAATGCAAAGTCATCGAAGATTTGAAGAACAGCACGAAGGCGAATGATTGGGTTTGTAATGGGTTGTCAGAAAATGTGGTCGAAGTGCTCACAAGATTTTTGAGTGATGCACATGCTCGACAGGACATAAGAGCTGAGAAAGATGGATCTGACTTATTTCTGGCATTCTTGAGTAAAAACAGGCAAGGTATATTGAATATACGCGAAGAAACATTGAGTTTTTTGGCCGGTTTGCTCCGTTCAGGAGTAACGGAAGAAGTTCTTTCTAGCTTAGAAGTGGTGTCTTGCCAGCAACAGTGCATATCCAAGTTTGTGGCTCCTGGAGTTCTTGACTCTATCCTAGAAATCATCGACTCTCCTATCAGAAATTTGAAGGAAAAAGCTGTTAAAATTCTATCCACTCTATCTTCAAGTTATGTCGTTGGCTCCCAAATCGTTTCTCACGGGTGCATACCAAAATTACTTCCTTTGCTCAACGATGATGATCTTTCGGGCAACTGTATTCTTCTACTGAAAAAATTATGCGACTTTGAGGAGGCTAGAATTTCTGTAGTTGAAACAAAAGGATGTCTCGCTTCTGTTGCACAACTTCTTGAGTCGGGCAGTCTAGAGAAGCAAGAAGATGCAGTTATGATTCTCCTTTCTTTATGTTCTCAAAGAGTTGAATATTGTGAATTGGTCATGGCTAATGGCATAATCCCTTCCCTCGTAACTATATCTGTCAATGGAAGTAAGAAAGGCCAGGTGGGAGCATTAGAGTTGCTTCGGCTTTTAAGAGAGGCCTGCGAGAATCGTGCATCTCAAAAACCCGAACACAATTCCTCGAGAAACAGCAGCAAGTCCCATGATGTGGATGAAAATAAAACACCATCCAAGTTTTTTAGATTTTTCAGAAAGAAATAA 1650 40.42 MYLYNFLNKYKDSVIVENHEGVDEMVINSVPVENSFNGASNCPSMEDKQHTACRENASEAITLSRAAPPAEYRCPLSLGIMYDPVIIASGQTYERFSIQKWFDKGHDSCPKTGMKLSNQSMTPNLSLKDLISRWCSNCGVAISDPSIEPETKSWEYSSNSKSWEYSSNSIASFGSSMNDFRLHMDFSNISLGSMDGSCYSYSLPPKPAIGLSLMSVQTKNDCSTPQSDANLQEVDFEFPSNLNELEWELQCKVIEDLKNSTKANDWVCNGLSENVVEVLTRFLSDAHARQDIRAEKDGSDLFLAFLSKNRQGILNIREETLSFLAGLLRSGVTEEVLSSLEVVSCQQQCISKFVAPGVLDSILEIIDSPIRNLKEKAVKILSTLSSSYVVGSQIVSHGCIPKLLPLLNDDDLSGNCILLLKKLCDFEEARISVVETKGCLASVAQLLESGSLEKQEDAVMILLSLCSQRVEYCELVMANGIIPSLVTISVNGSKKGQVGALELLRLLREACENRASQKPEHNSSRNSSKSHDVDENKTPSKFFRFFRKK 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 11960303 11962087 - Bpe006565.1 Bpe13g00442 113222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe13g00442 549 MobiDBLite consensus disorder prediction 514 542 - -
Bpe13g00442 549 CDD RING-Ubox_PUB 72 113 IPR045210 -
Bpe13g00442 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 140 IPR013083 -
Bpe13g00442 549 Gene3D - 240 520 IPR011989 -
Bpe13g00442 549 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Bpe13g00442 549 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Bpe13g00442 549 MobiDBLite consensus disorder prediction 514 549 - -
Bpe13g00442 549 SUPERFAMILY RING/U-box 61 143 - -
Bpe13g00442 549 Pfam U-box domain 69 136 IPR003613 GO:0004842|GO:0016567
Bpe13g00442 549 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 34 527 - -
Bpe13g00442 549 SUPERFAMILY ARM repeat 308 508 IPR016024 -
Bpe13g00442 549 PANTHER U BOX DOMAIN-CONTAINING 34 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe13g00442 - - - qsu:111998800 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g00442 Bpe-Chr13:11960303 Bpe13g01504 Bpe-Chr13:20431440 6.05E-47 dispersed
Bpe13g00442 Bpe-Chr13:11960303 Bpe02g00386 Bpe-Chr2:2517191 1.01E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe13g00442 Bpe_Chr13 FPKM 0.885983 0.898843 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0